Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01855 ATGACACCTGGTTACGAATACGATATTAATGATCTGCATCAAGAAGCTCAGGCCAGATGGCTGAAGCCTGCAGAAGTGATGTACATTTTACAGAATCATGAAAAGTTCCAGTTCACCCAAGAGCCCCCGCAACAGCCAACCAGTGGATCCCTGTTTCTGTTCAACAAAAGAGTCCTGCGTTTCTTCCGGAGAGACGGTCATAACTGGCGCAAGAAAAGAGATGGAAGAACTGTGGGAGAAGCACATGAACGGCTGAAGGTTGGGAATGTTGAAGCCTTAAATTGTTACTATGCACATGGAGAGCAGAACCCTAGTTTCCAGAGGCGGAGCTACTGGATGCTGGATCCGGAATATGAGCATATTGTTCTTGTGCATTATCGAAACACAAGTGAGGGAAAACTCAGTTCTGGAGCCGGCGCACAACTGTCACCAAGTTCCTCTTCTGCGTTTAGTCAGAGTCCTAGCCCATATTCTAATCAGAATCCAGGGTCTACGTCAATACTTGGTGATTCGAATGAACCCAATCAGAGTTTCTCTAGTCCTGGATCTACAGAAGTTACCTCAGATGTATTCGTTCTGAACAATAAAATGGATCACATGGATGGAACCGATGCAGAATCAGGAACCTCATCTGAGTTTGAGGTTAGTCAAGCTTTGCGCCGATTGGAGATACAATTAAGTTTGAATGAGGACAGCTTTGAAGATATTGCTCCCTTCTGCAATAAGCAAGAAACTACAACTACAATCGATTCAAACCCTCAGCACAATCAAAGGGTGATCAACAATCAAGAGCAATCTGCAGCTTTCTCTGAACCTGATGATCAAGGGCTATTTTATGATGAATATAGGCAAGGTTTCTCTGAAATTGACATTACTGCAGTAGACTTTATAGGAGGAACATATTCAAATGTGGAACAGGCTGTAAAGTTTGCTTTGTCTTCTTCATTATGGAAACATCATCTGGAGAGAGAGGAAGACCATGGTTACCCTGATGGACATGAAAAAGCTTTATGGACAGGGGTGCTGGAATCATGTAAGTCCTCAACTGCTGTCAACTTACGGTCGAAAAATGTATACATGACAGCTGGAAATGAAAATTCAGTATCTTCTTGGAGAAGGGTACAAGAACCAGTTTCCAACCAGGAAAACAGTCACTGGCTCAACTTCAACAGCAATAATTCTCAGAGCTCAGCTGTTTTCTCACCACCTCAAGGTGTTGATGAAGTCAAATTTCCTGCATATTCTTCTATGGTGGAAACACGAGTAATTAATTCAGACTACTATGAAACATTGTTTGACCAAAGCCCAATTGTAGCACCTCTATATGCAGATTCAAGCTTGACTGTTGCACAAAAACAGAAATTTACTATTAAGACAATATCCCCAGAATGGAGTTATGCCACTGAGACTACTAAGGTCATCATTGTTGGGTCTTTTCTCTGTCATCCGTCAGATTCTACCTGGGCTTGCATGCTTGGTGATGTTGAAGTTCCTGTTGAGATAATTCAAGATGGTGTAATCTGTTGTGAAGCTCCACCTCACCTTCCTGGAAAGGTTACTCTGTGCATTACTTCTGGAAACCGGGAGTCCTGCAGTGAAGTCAGAGAGTATGAATATCGTGATAAGACCTATAGTTGCACCCGGTGTACTCAATTGGAAACAGAATCCACTAGAAGTCCTGAAGAGCTGTTATTACTTGTTAGATTAGGTCAGATGCTTCTTTCTGCATCAACAATAAACAATGACAACATAGAATCTGGAATTCCTCTCATAAAACAGAAAGCTGATGATGACTCATGGAGCCATATTATAGAAGCTCTTCTAGTTGGCAGTGGAACTTCGACTGGGACTATTGATTGGCTTCTTGAAGAGCTTCTAAAGGATAAGCTTCAACAGTGGCTTTCTTGCAGATGTCAGGAAAGAGATGAAGAAACAGGCTGCTCTTTGTCCAAGAAAGAGCAAGGGATAATTCACATGGTTGCTGGGTTGGGTTTTGAGTGGGCCTTAAACCCTATTCTTCGTTGTGGAATGAATATAAATTTCCGTGATATCAACGGGTGGACTGCCCTTCATTGGGCTGCACGATTCGGAAGGGAAAAAATGGTTGCTTCACTTGTTGCTTCTGGAGCATCTGCTGGAGCTGTGACAGATCCAACTGCACAAGATCCAATCGGTAAAACTGCTGCATCTATTGCAGCCAGCAAAGGGAACAAGGGACTAGCAGGGTATCTTTCAGAGGTAGCTGTGACAAGCCATCTATCATCACTTACACTGGAAGAGAGTGAATTATGCAAAAATTCTGCTGAGCTTCAGGCAGATATGACTGTTACCAGTGTTTCCAATGAAAATCTTGCTGCCAATGAGGATCAGGCGTCACTCAAAGATACCTTGGCTGCCATCAGAAATGTAACTCAGGCAGCTGCGCGGATACAATCTGCTTTTCGCTCACATTCTTTTAGAAAACGGAGAGCAAGAGAAGCAGCTGCTGGTATAGATAGATATGGTTCGAGTGCAGGTGGCATTGGTAGCATTCCAGAAATTTCTGCTCTGTCAAAACTTGCCTTTCGGAATTCACGTGAAAATAATTCAGCTGCTTTATCAATTCAGAAGAAATATCGTGGTTGGAAAGGTCGCAAAGATTTCTTAACATTGCGCCAAAAAGTAGTGAAGATACAGGCTCATGTGAGGGGTTACCAGGTTAGGAAGCATTACAAGGTAATATGGGCAGTTGGAATCTTGGACAAGGTTGTGCTACGATGGAGAAGAAAAGGAGCTGGTTTACGAGGTTTCCGACAAGAGATGGACATAAATGAAAATGAAGATGAAGATATTCTCAAGGTGTTCCGAAAACAGAACGTTGACGTAGAAATTGAAAAGGCTGTTTCACGGGTGCTGTCCATGGTCGACTCACCAGATGCTCGTGAGCAATATCATCGCATGCTTGAGAAATATCAGCAAGCTAAGGCTGAACTTGCGGGGACCAGTGACGAAGCATCATCAACAGCCTCTGTGGGGAATGCGTTATTTATGGAAGATGATGTTTATCCATTTCCCTAG 3057 0.4302 MTPGYEYDINDLHQEAQARWLKPAEVMYILQNHEKFQFTQEPPQQPTSGSLFLFNKRVLRFFRRDGHNWRKKRDGRTVGEAHERLKVGNVEALNCYYAHGEQNPSFQRRSYWMLDPEYEHIVLVHYRNTSEGKLSSGAGAQLSPSSSSAFSQSPSPYSNQNPGSTSILGDSNEPNQSFSSPGSTEVTSDVFVLNNKMDHMDGTDAESGTSSEFEVSQALRRLEIQLSLNEDSFEDIAPFCNKQETTTTIDSNPQHNQRVINNQEQSAAFSEPDDQGLFYDEYRQGFSEIDITAVDFIGGTYSNVEQAVKFALSSSLWKHHLEREEDHGYPDGHEKALWTGVLESCKSSTAVNLRSKNVYMTAGNENSVSSWRRVQEPVSNQENSHWLNFNSNNSQSSAVFSPPQGVDEVKFPAYSSMVETRVINSDYYETLFDQSPIVAPLYADSSLTVAQKQKFTIKTISPEWSYATETTKVIIVGSFLCHPSDSTWACMLGDVEVPVEIIQDGVICCEAPPHLPGKVTLCITSGNRESCSEVREYEYRDKTYSCTRCTQLETESTRSPEELLLLVRLGQMLLSASTINNDNIESGIPLIKQKADDDSWSHIIEALLVGSGTSTGTIDWLLEELLKDKLQQWLSCRCQERDEETGCSLSKKEQGIIHMVAGLGFEWALNPILRCGMNINFRDINGWTALHWAARFGREKMVASLVASGASAGAVTDPTAQDPIGKTAASIAASKGNKGLAGYLSEVAVTSHLSSLTLEESELCKNSAELQADMTVTSVSNENLAANEDQASLKDTLAAIRNVTQAAARIQSAFRSHSFRKRRAREAAAGIDRYGSSAGGIGSIPEISALSKLAFRNSRENNSAALSIQKKYRGWKGRKDFLTLRQKVVKIQAHVRGYQVRKHYKVIWAVGILDKVVLRWRRKGAGLRGFRQEMDINENEDEDILKVFRKQNVDVEIEKAVSRVLSMVDSPDAREQYHRMLEKYQQAKAELAGTSDEASSTASVGNALFMEDDVYPFP 1018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01855 1018 Gene3D - 561 750 IPR036770 -
Spst3g01855 1018 FunFam Calmodulin-binding transcription activator 2 450 543 - -
Spst3g01855 1018 FunFam Calmodulin-binding transcription activator 4 isoform A 566 750 - -
Spst3g01855 1018 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 8 990 - -
Spst3g01855 1018 SMART CG_1_2 12 130 IPR005559 GO:0003677
Spst3g01855 1018 Pfam CG-1 domain 15 128 IPR005559 GO:0003677
Spst3g01855 1018 SUPERFAMILY Ankyrin repeat 654 747 IPR036770 -
Spst3g01855 1018 ProSiteProfiles CG-1 DNA-binding domain profile. 9 135 IPR005559 GO:0003677
Spst3g01855 1018 SUPERFAMILY E set domains 456 540 IPR014756 -
Spst3g01855 1018 Coils Coil 977 997 - -
Spst3g01855 1018 Pfam Ankyrin repeats (3 copies) 667 745 IPR002110 GO:0005515
Spst3g01855 1018 Pfam IPT/TIG domain 456 532 IPR002909 -
Spst3g01855 1018 ProSiteProfiles IQ motif profile. 804 829 IPR000048 GO:0005515
Spst3g01855 1018 ProSiteProfiles Ankyrin repeat region circular profile. 685 711 - -
Spst3g01855 1018 SMART ANK_2a 685 714 IPR002110 GO:0005515
Spst3g01855 1018 SMART ANK_2a 724 753 IPR002110 GO:0005515
Spst3g01855 1018 ProSiteProfiles IQ motif profile. 861 890 IPR000048 GO:0005515
Spst3g01855 1018 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 852 907 IPR027417 -
Spst3g01855 1018 ProSiteProfiles Ankyrin repeat profile. 685 717 IPR002110 GO:0005515
Spst3g01855 1018 FunFam Calmodulin-binding transcription activator 2 860 908 - -
Spst3g01855 1018 Pfam IQ calmodulin-binding motif 886 905 IPR000048 GO:0005515
Spst3g01855 1018 Pfam IQ calmodulin-binding motif 863 881 IPR000048 GO:0005515
Spst3g01855 1018 Gene3D - 860 909 - -
Spst3g01855 1018 CDD IPT 456 541 - -
Spst3g01855 1018 MobiDBLite consensus disorder prediction 133 185 - -
Spst3g01855 1018 Gene3D Immunoglobulins 450 544 IPR013783 -
Spst3g01855 1018 ProSiteProfiles IQ motif profile. 884 909 IPR000048 GO:0005515
Spst3g01855 1018 SMART iq_5 883 905 IPR000048 GO:0005515
Spst3g01855 1018 SMART iq_5 860 882 IPR000048 GO:0005515
Spst3g01855 1018 SMART iq_5 802 824 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g01855 Spst-Chr3 33519182 33528722 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g01855 5 994 CAMTA Transcription Factor Family AT1G67310 51.578 0.0 907
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Spst3g01855 CG-1 4.9e-49 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01855 K21596 - gmx:100786880 1597.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g01855 3 33519182 33528722 Spst3g01855 3 33519182 33528722 ECH
Spst1g01874 1 26927828 26931792 Spst3g01855 3 33519182 33528722 PCT