Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01853 ATGGACACGAAGATGGGTTTTCCAGGTGGTGGGGGGGGTGGAAAGATGTGGCACATATGGTGGGAGAAGATCTCAGGGCAGGGTTGCAAAATTCACCAACAGTACTACCAGTATATTGGCTCTAAGAAAGTGAAGAGAGCGTTGTGGAGGAAGCTTTTGCTGACATGGGTGGTGGGTTGGATTATAGTATCTTTGTGGATCTTGTGCTACATGAGCTTGCAGGGTATTGAGAAGAGGAAAGAGACTCTGGCAAGTATGTGTGATGAAAGAGCTAGGATGCTTCAGGATCAGTTTAACGTCAGTATGAACCATATCCAAGCCATGTCCATTCTGATCTCCACCTTTCACCATGCCAAGAACCCTTCAGCCATCGATCAGAAAACTTTTGCAAGGTACACAGAAAGAACAGCTTTTGAGAGGCCTCTTACAAGTGGTGTTGCATATGCTGTAAGGGTTCTCCATTCTGAAAGGGAACAATTTGAAAAGCAACAAGGTTGGACCATCAAGAGGATGGACACTCTAGAGCAGAACCCGGTTCACAAGGACGATTATGCCCCAGAGGCATTGGAGCCATCCCCCGTCCAGGAAGAATACGCTCCTGTCATCTTTGCACAAGATACAATTGCACATGTGATTTCTGTTAATGTGCTTTCTGGAAAGGAAGACCGTGAGAATGTGCTGCGTGCAAGAGAATCAGGCAAAGGGGTTTTAACTGCTCCCTTCAGGCTTCTCAAAACAAACCGTCTAGGGGTTATCCTGACATTTGCTGTCTACAAGAGAGATCTTCCATCAAATGCAACCCCAAATGAAAGGATTCAAGCAACTGATGGGTATCTTGGGGGAGTCTTTGATGTTGAGTCATTAGTGGAGAAATTACTTCAGCAACTTGCTAGCAAGCAAACTGTAATTGTTAATGTGTATGATACTACAAATCATACTCATCCAATTGCCATGTATGGTTCAAACGAATCAGGCGATGATTTCTATCATGTCAGCACTCTTAACTTCGGAGACCCTTTTAGGAAGCACGAGATGCACTGTAGGTTCAAGCAGAAACCACCATGGCCGTGGTTGGCAATAACTACTTCATTTGGTATCCTTGTTATTGCATTCCTTGTCGGATATATTTTCCATGCCACTGTGAATCGAATTGCCAAAGTAGAGGAAGATTGCCGTGTGATGACGGAACTTCAGAAACAAGCTGTGGCTGCTGATGTTGCAAAATCCCAGTTTCTTGCTACTGTTTCCCATGAGATCAGAACACCAATGAATGGTGTTTTAGGGATGTTGCATATGCTTATGGATACAGATCTAGATGTAACCCAACAGGAATATGTCAGGACAGCACAGGAAAGTGGAAAAGCTCTGGTGTCACTTATAAACGAGGTTTTGGATCAAGCTAAGATTGAATTTGGCAAGCTAGAGCTTGAGGCTGTACTCTTTGACATCCGGGCAATTTTGGATGATGTATTGTCACTATTTTCTGAGAAGTCTCAAGGAAAAGGAGTAGAGTTGGCAGTTTATGTGTCAGATCAGGTTCCAGAATTATTAGTAGGTGATCCAAGAAGATTTCGACAAATAATTACCAATCTCATGGGTAACTCAATTAAGTTCACTGACAAAGGACATATTTTTGTCACTATCCATCTTGTTGAGGAAGTTGTCCATTCAATAGAGGTTGACAAAGAATCGAACTCAGAAAATACTTTGAGTGGTTCCCTTGTTGCTGATAGTCGCCGCAGCTGGGAAGGATTCAGGGCTTTCAGTCAAGAGGGACCTCTTGGTTCCTTCTCATCCCTCTCCAATGATCTTGTCAATTTGATTGTATCTGTCGAGGATACAGGTGAAGGCATTCCTCTTGATTCTCAACCCCGCATCTTCACCCCATTCATGCAGGTAGGTCCATCCATTTCCAGAAAGCATGGAGGAACAGGTATTGGCCTAAGTATTAGCAAGTGTTTGGTTGGTCTTATGAATGGAGAAATTGGATTTGTGAGCATACCCAAGATTGGATCCACATTCACTTTTACTGCTGTATTCACCAATGGTCTCCGCAATTCAAATGAGTGTAAAATTCAGCAAACCAGCAACCAACAGTCTGCATCTTCAGAATTTGAGGGGATGACTGCATTAATTATTGACCCAAGACCTGTTAGAGCAAAAGTGTCAAGATATCACATCCAACGGCTTGGCATTCATGTTGAGATAGTTTCTGATTTAAACCAAGGTTTGCTAACCATAAGCAATGGGAATATAGTTATTAATATGGTCTTGATTGAGCAGGAGGTTTGGGATAGAGATTTAGGCTTGTCATCTCACTTTGTCAATAATACAAGGAAAATTGATCATGGTGTTCCTCCAAAGCTGTTCATTCTTGTTAATTCTAGTACTTCTTTTAAAGCTAGTGTAAACACGGATGCTGATAATCCTACTGTCATCACCAAACCTCTGAGAGCAAGTATGCTTGCTGCCTCACTACAACGAGCCATGGGTGTCCAAAACAAGGGAGCTCCTCGAAATAGAGAGCTTCAAAGTTTGTCTCTTCGCCATCTTCTTCGTGGCAGGAAAATTCTAATTGTAGATGACAATGCTGTGAACCGTGCTGTAGCAGCTGGTGCGTTGAAAAAGTATGGAGCAGATGTGGTTTGTGTTAGCAGTGGGAAAGAAGCCATCTCTTCCCTGAAGCCACCCCATCAGTTTGATGCCTGTTTCATGGATATTCAAATGCCTGAAATGGATGGTTTTGTAGCTACAAAGCGAATTAGGGAGATGGAAGAAAGTGTGAACAGAGAAGTATCGATGGATGAGAATGTTACAAACTGGCATGTACCCATTTTAGCCATGACTGCAGATGTGATACAGGCTACACATGAGAAATGCCTGAAGGATGGCATGGATGGATATGTTTCAAAACCATTTGAAGCTGAACAGCTCTATAGAGAAGTCTCGCGATTTTTCCAGTCATCTTGA 2970 0.4286 MDTKMGFPGGGGGGKMWHIWWEKISGQGCKIHQQYYQYIGSKKVKRALWRKLLLTWVVGWIIVSLWILCYMSLQGIEKRKETLASMCDERARMLQDQFNVSMNHIQAMSILISTFHHAKNPSAIDQKTFARYTERTAFERPLTSGVAYAVRVLHSEREQFEKQQGWTIKRMDTLEQNPVHKDDYAPEALEPSPVQEEYAPVIFAQDTIAHVISVNVLSGKEDRENVLRARESGKGVLTAPFRLLKTNRLGVILTFAVYKRDLPSNATPNERIQATDGYLGGVFDVESLVEKLLQQLASKQTVIVNVYDTTNHTHPIAMYGSNESGDDFYHVSTLNFGDPFRKHEMHCRFKQKPPWPWLAITTSFGILVIAFLVGYIFHATVNRIAKVEEDCRVMTELQKQAVAADVAKSQFLATVSHEIRTPMNGVLGMLHMLMDTDLDVTQQEYVRTAQESGKALVSLINEVLDQAKIEFGKLELEAVLFDIRAILDDVLSLFSEKSQGKGVELAVYVSDQVPELLVGDPRRFRQIITNLMGNSIKFTDKGHIFVTIHLVEEVVHSIEVDKESNSENTLSGSLVADSRRSWEGFRAFSQEGPLGSFSSLSNDLVNLIVSVEDTGEGIPLDSQPRIFTPFMQVGPSISRKHGGTGIGLSISKCLVGLMNGEIGFVSIPKIGSTFTFTAVFTNGLRNSNECKIQQTSNQQSASSEFEGMTALIIDPRPVRAKVSRYHIQRLGIHVEIVSDLNQGLLTISNGNIVINMVLIEQEVWDRDLGLSSHFVNNTRKIDHGVPPKLFILVNSSTSFKASVNTDADNPTVITKPLRASMLAASLQRAMGVQNKGAPRNRELQSLSLRHLLRGRKILIVDDNAVNRAVAAGALKKYGADVVCVSSGKEAISSLKPPHQFDACFMDIQMPEMDGFVATKRIREMEESVNREVSMDENVTNWHVPILAMTADVIQATHEKCLKDGMDGYVSKPFEAEQLYREVSRFFQSS 989
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01853 989 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 394 473 IPR036097 GO:0000155|GO:0007165
Spst3g01853 989 ProSiteProfiles Histidine kinase domain profile. 414 682 IPR005467 -
Spst3g01853 989 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 461 677 IPR036890 -
Spst3g01853 989 Gene3D - 376 470 - -
Spst3g01853 989 SMART CHASE_2 120 321 IPR006189 -
Spst3g01853 989 CDD HATPase_EvgS-ArcB-TorS-like 524 680 - -
Spst3g01853 989 SMART REC_2 855 982 IPR001789 GO:0000160
Spst3g01853 989 FunFam Histidine kinase 4 379 470 - -
Spst3g01853 989 Pfam Response regulator receiver domain 857 981 IPR001789 GO:0000160
Spst3g01853 989 SUPERFAMILY CheY-like 705 831 IPR011006 -
Spst3g01853 989 Gene3D - 850 989 - -
Spst3g01853 989 PRINTS Bacterial sensor protein C-terminal signature 625 635 IPR004358 GO:0016310|GO:0016772
Spst3g01853 989 PRINTS Bacterial sensor protein C-terminal signature 642 660 IPR004358 GO:0016310|GO:0016772
Spst3g01853 989 PRINTS Bacterial sensor protein C-terminal signature 607 621 IPR004358 GO:0016310|GO:0016772
Spst3g01853 989 PANTHER TWO-COMPONENT HISTIDINE KINASE 55 979 - -
Spst3g01853 989 FunFam Histidine kinase 4 124 353 - -
Spst3g01853 989 Gene3D CHASE domain 124 353 IPR042240 -
Spst3g01853 989 Pfam His Kinase A (phospho-acceptor) domain 407 470 IPR003661 GO:0000155|GO:0007165
Spst3g01853 989 ProSiteProfiles CHASE domain profile. 120 346 IPR006189 -
Spst3g01853 989 SMART HisKA_10 407 472 IPR003661 GO:0000155|GO:0007165
Spst3g01853 989 SMART HKATPase_4 519 682 IPR003594 -
Spst3g01853 989 Gene3D - 471 682 IPR036890 -
Spst3g01853 989 CDD PRTases_typeI 808 884 IPR000836 -
Spst3g01853 989 Gene3D - 71 123 - -
Spst3g01853 989 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 519 680 IPR003594 -
Spst3g01853 989 Pfam CHASE domain 123 319 IPR006189 -
Spst3g01853 989 SUPERFAMILY CheY-like 852 986 IPR011006 -
Spst3g01853 989 ProSiteProfiles Response regulatory domain profile. 856 986 IPR001789 GO:0000160
Spst3g01853 989 CDD HisKA 407 468 IPR003661 GO:0000155|GO:0007165
Spst3g01853 989 CDD REC_hyHK_CKI1_RcsC-like 857 982 - -
Spst3g01853 989 ProSiteProfiles Response regulatory domain profile. 709 830 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g01853 Spst-Chr3 33500881 33507119 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g01853 16 988 Miscellaneous Gene Families AT1G27320 70.438 0.0 1384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Spst3g01853 CHASE 1.7e-36 CL0165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01853 K14489 - gmx:100801546 1792.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g01853 3 33500881 33507119 Spst3g01853 3 33500881 33507119 ECH