Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01838 ATGGGAAGGGGAAGAGTGGAGTTGAAGAGAATTGAGAACAAGATCAACAGGCAAGTGACCTTCGCTAAACGAAGGAACGGGCTTTTGAAGAAAGCTTACGAGCTTTCCGTTCTTTGTGATGCCGAGGTTGCTCTCATCATCTTCTCCAATAGAGGAAAGCTGTACGAGTTTTGCAGCAGTTCAAGACAGGTGGCGGTTGAGGGTTTCTGCGATCGTGTTGCTGTTAGATCTGCAACTGGAAACGCGTTAAACCCCAACAGACATACATGA 270 0.4704 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSRQVAVEGFCDRVAVRSATGNALNPNRHT 89
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01838 89 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Spst3g01838 89 FunFam MADS-box transcription factor MADS-MC 13 87 - -
Spst3g01838 89 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Spst3g01838 89 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Spst3g01838 89 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Spst3g01838 89 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Spst3g01838 89 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 73 - -
Spst3g01838 89 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Spst3g01838 89 SUPERFAMILY SRF-like 2 70 IPR036879 GO:0003677|GO:0046983
Spst3g01838 89 CDD MADS_MEF2_like 2 61 IPR033896 GO:0000977|GO:0045944
Spst3g01838 89 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Spst3g01838 89 Gene3D - 13 81 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g01838 Spst-Chr3 31906841 31907362 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g01838 1 61 MADS-box Gene Family AT1G24260 100.000 1.36e-38 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Spst3g01838 SRF-TF 3.6e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01838 - K09264 han:110917628 123.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g01838 3 31906841 31907362 Spst3g01838 3 31906841 31907362 ECH
Spst3g01838 3 31906841 31907362 Spst6g00962 6 8793018 8800236 PCT