Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01837 ATGCAGTTGTCTGGGTCAGAATTAAGCAGTCAACAGGAGTACTTGAAGCTGAAGGCACGTTATGAGGCCCTACAACGGTCCCAGAGGAACCTTATGGGAGAAGATCTTGGTCCTCTAAGCAGCAAAGAACTCGAATCTCTTGAAAGGCAGCTAGATTCGTCCTTGAAGCAAATAAGATCAACAAGGACCCAGTTCATGCTGGATCAGCTCTCTGATCTTCAGCGTAAGGAACACTTGCTAAGCGAGGCTAACAGGTCTCTCAGACAAAGGCAGTTGGAAGGGTATCAAATAAATCCACTCCAACTGAATCCTGGAGTTGAAGACATGGGATATGGTAGGCATCCAGGTCAAGCTCAGGGTGACGCACTCTTTCAACCGTTGGAGTGTGAGCCAACGTTACAAATTGGGTATCAGCCTGATCCAGTATCAGTGGTGACAGCAGGTCCAAGCATGAGCAATTACATGGCTGGATGGTTACCATAG 483 0.4762 MQLSGSELSSQQEYLKLKARYEALQRSQRNLMGEDLGPLSSKELESLERQLDSSLKQIRSTRTQFMLDQLSDLQRKEHLLSEANRSLRQRQLEGYQINPLQLNPGVEDMGYGRHPGQAQGDALFQPLECEPTLQIGYQPDPVSVVTAGPSMSNYMAGWLP 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01837 160 Coils Coil 70 90 - -
Spst3g01837 160 Pfam K-box region 9 90 IPR002487 GO:0003700|GO:0005634|GO:0006355
Spst3g01837 160 Coils Coil 44 64 - -
Spst3g01837 160 ProSiteProfiles K-box domain profile. 7 98 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g01837 Spst-Chr3 31899992 31901585 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g01837 7 160 MADS-box Gene Family AT1G24260 64.968 1.86e-55 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01837 - - gmx:100805078 296.204