Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01819 ATGGATGAGGATTTCGAGTTCCCGAGTGTTGGCAGCATGGAAATGCCTGAGGAGGAGATAGAGAGTTCGATCCTTAAGGTTGGGGAGGAGAAGGAGATTGGGAACATGGGTATGAAGAAGAAGCTGCTGAAGGAAGGTGAAGGTTGGGACACCCCCAACAGTGGAGACCAAGTTGAAGTGCATTATACCGGAACCTTGCTTGATGGAACTCAATTTGATTCTAGCCGTGGTAGGGGGACACCTTTCAAGTTCAAGCTTGGCCAAGGGCAAGTGATCAAGGGATGGGATGAAGGTATTAAAACTATGAAGAAAGGTGAAAATGCCCTTTTCACCATTCCCCCAGAATTGGCTTATGGAGAGTCTGGATCTCCTCCCTCTATTCCCCCTAATGCAACTCTGCAGTTTGATGTGGAGTTGTTGTCTTGGACAAGTGTGAAGGACATATGCAAGGATGGAGGAATTTTGAAGAACATAATTACTGAAGGGGAGAAATGGGATAATCCTAAGGACCTTGATGAAGTCTTTGTCAAGTACGAAGCTCGGCTTGAAGATGGAACAGTCATTTCAAAATCTGGTGGGGTGGAATTCACGGTGGAAGAGGGGTATTTCTGTCTTGCTTTGGCTAAGGCTGTGAAAACAATGAAGAAGGGAGAGAAAGTTCTCTTGAATGTGAATCCACAGTATGCATTTGGTGAGAGCGGAAGGCCAGCATCAGGAGAAGAAGGTGCCGTACCTCCAAATGCTTCACTTCAAGTGGATCTTGAGTTGGTCTCGTGGAAGAACGTGTCTGACATTACCAAAGATAGGAAGGTTCTCAAGAAGACTTTGAAGGAAGGAGAGGGATATGAACGACCAAACGATGGAGCTGTAGTTCAAGTGAAACTAATTGGCAAGCTACAAGATGGAACTGTTTTCATTAAGAAGGGCCATGACGATGAACAGCCATTCGAGTTCAAGATTGATGAAGAGCAAGTAATTGATGGACTTGACAAAGCTGTGAAGAACATGAAGAAAGGTGAAATTGCATCGCTGATCATACAACCAGAATATGCTTTTGGCTCATCTGGGTCCCCTCAGGAATTGGCTATTGTTCCTCCCAATTCAACTGTGTACCATGAAGTTGAGCTGCTTTCCTTTGAAAAGGAGAAGGAATCATGGGATCTGAATACACCAGAGAAGATTGAGGCAGCTAGGAAGAAAAAGGAAGAAGGGAATGCTTTATTTAAGGTTGGAAAATATGAAAGAGCGGCAAAGAGATATGAAAAGGCCATAAAATTTATTGAATACGATTCCTCCTTCAGTGATGAGGAGAAACAGCAAGCCAAGACATTGAAAATCACATGCAATCTCAACAATGCAGCCTGTAAGTTGAAGCTAAAGGACTACAAACAGGCAGAGAAGATGTGCACCAAGGCGTTAGAGCTTGATAGTAGAAACGTAAAAGCATTGTACCGGAGGGCACAAGCATATCTTCATCTTGTGGACTTGGATCTAGCTGAAATGGACATTAAAAAAGCCCTTGAGATTGAGCCGGACAACAGGGATGTGAAGATGGAGTACAAAATTTTGAAGCAGAAAGTGAGAGAATACAACAAGAAGGACGCTCAGTTTTACGGCTGCATGTTTGCTAAAATGAATAAACTAGAACAAGCTAGAGCAGCAACAGCAAACCAGGAGCCTGTGCCAATGACTATTGACAGTAAAGCTTAA 1710 0.4363 MDEDFEFPSVGSMEMPEEEIESSILKVGEEKEIGNMGMKKKLLKEGEGWDTPNSGDQVEVHYTGTLLDGTQFDSSRGRGTPFKFKLGQGQVIKGWDEGIKTMKKGENALFTIPPELAYGESGSPPSIPPNATLQFDVELLSWTSVKDICKDGGILKNIITEGEKWDNPKDLDEVFVKYEARLEDGTVISKSGGVEFTVEEGYFCLALAKAVKTMKKGEKVLLNVNPQYAFGESGRPASGEEGAVPPNASLQVDLELVSWKNVSDITKDRKVLKKTLKEGEGYERPNDGAVVQVKLIGKLQDGTVFIKKGHDDEQPFEFKIDEEQVIDGLDKAVKNMKKGEIASLIIQPEYAFGSSGSPQELAIVPPNSTVYHEVELLSFEKEKESWDLNTPEKIEAARKKKEEGNALFKVGKYERAAKRYEKAIKFIEYDSSFSDEEKQQAKTLKITCNLNNAACKLKLKDYKQAEKMCTKALELDSRNVKALYRRAQAYLHLVDLDLAEMDIKKALEIEPDNRDVKMEYKILKQKVREYNKKDAQFYGCMFAKMNKLEQARAATANQEPVPMTIDSKA 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01819 569 ProSiteProfiles TPR repeat profile. 397 430 IPR019734 GO:0005515
Spst3g01819 569 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 51 140 IPR001179 GO:0003755
Spst3g01819 569 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 168 257 IPR001179 GO:0003755
Spst3g01819 569 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 282 377 IPR001179 GO:0003755
Spst3g01819 569 Gene3D - 27 146 IPR046357 GO:0003755
Spst3g01819 569 Gene3D Tetratricopeptide repeat domain 383 540 IPR011990 GO:0005515
Spst3g01819 569 ProSiteProfiles TPR repeat profile. 480 513 IPR019734 GO:0005515
Spst3g01819 569 SUPERFAMILY TPR-like 390 546 IPR011990 GO:0005515
Spst3g01819 569 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 151 263 - -
Spst3g01819 569 FunFam Peptidylprolyl isomerase 28 146 - -
Spst3g01819 569 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 288 380 IPR001179 GO:0003755
Spst3g01819 569 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 171 260 IPR001179 GO:0003755
Spst3g01819 569 SUPERFAMILY FKBP-like 263 399 - -
Spst3g01819 569 Coils Coil 513 533 - -
Spst3g01819 569 Gene3D - 147 260 IPR046357 GO:0003755
Spst3g01819 569 Pfam Tetratricopeptide repeat 457 512 - -
Spst3g01819 569 FunFam Peptidylprolyl isomerase 147 260 - -
Spst3g01819 569 SMART tpr_5 480 513 IPR019734 GO:0005515
Spst3g01819 569 SMART tpr_5 446 479 IPR019734 GO:0005515
Spst3g01819 569 SMART tpr_5 397 430 IPR019734 GO:0005515
Spst3g01819 569 FunFam Peptidylprolyl isomerase 261 382 - -
Spst3g01819 569 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 55 143 IPR001179 GO:0003755
Spst3g01819 569 SUPERFAMILY FKBP-like 15 155 - -
Spst3g01819 569 FunFam Peptidylprolyl isomerase 385 540 - -
Spst3g01819 569 Gene3D - 261 381 IPR046357 GO:0003755
Spst3g01819 569 SUPERFAMILY FKBP-like 147 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g01819 Spst-Chr3 28687290 28690177 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g01819 25 569 Calmodulin-binding Proteins AT5G48570 73.905 0.0 832
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01819 K09571 - gmx:100810243 1024.23