Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01805 ATGTATTCTTCAGGTAAGGAATTATTGTCATTGTCTGATATTATGTCTGAGAATAACTTGCAGTTTCTGCCTCCACATTGGATTCTGGTTAAACCTTTTGGAATACCAGTGGGCCGGATCAGGCCCAGTCAAAGACAAGAAACCCAACCCCCGACTCCAGCACGCTCGTACATGATTGAAGTTCACATAATGCTATCTCTCAAGTCACACCCTCCTCTTTTATTTTCTCTATTCAACAAATTATCCTCTCACTGTCTCGCTTCCTTTCTCTCTTTCTCAGCCCAATGCCATTACCAAAACTTCAACGAAACCACTTCCATAGTTGATGACCTAAATGCCAACTTCAAATTCTCCAGAACCCAATTCATTTATGTCTCTAATCGTGTTTCACGGATCAGAGTCCGTCAAAATCCCTTGTCAGTGCTCAATTTTTTCAAAGAAATTGGCTTTACCCAACCCCAGATTGTCTCTATGATTCGTCAGAGACCCCAGATACTGTTTACAAACGTTGACAAAGTCTTGAGACCCAAAGTTCAGTTCTTTCAGCTATCTGGATTCCAGGGTTCCGATTTATGCAGCTTCATTTCCAAGAGTCCCTCCATTTTGACTCATAGCTTGAAGAAAACATTGGCCCCTTCAGTGGAAGCTATTAGGAAAATTGTGTGCGATCAGAAAGATTTTATTCATGTGTTGCACAGATCTGGTTGGCTACTCGTGAATTACAAAAAGTTTATGGACAATGTTGTCTTCTTGGAGAGCTGTGGCATTGCTGGGCCTCATCTTGCATTGCTACTTAAACTAGATCCAAGGTTTTTCAGTTCACCGCAGTCTTTTATTGGAAAGCGTGTTTCGCGAGCTGTAGAATTGGGTTTCCGTGAAAATTCAAGAATGCTTGTTTATGCAATTCATACAATTTGTTGTTTGAGCAATAAAACATTTGAGAGAAAGCTGAACGTAATTAATAGTTTTGGGTTTTCCAAGGATGAGGGCTTGCAAATGTTCAGAAGAGCCCCAACTTTGTTTAGAACATCAGAGAAGAAGTTGAAGGCTGGAATGGAATTCTTCTTGCATACAGTTATGCTACCCAAGTCAGCCCTTGTTTATCAGCCTAAGCTTTTAATGTACTGCCTGGAGGATCGCTTGCTTCCTCGATATAAAGTCTTCCAGCTGTTGAAATCGAAAAACCTTTTTAAGAAGGTCCCCAGTTATATTCATATGTTTTGTTTGCCAGAAGATATGTTCTTGGACAAGTATATATCACGGTTCAGAGAAAATGCAGAGGATTTATTAGTAGCATACAAGGGTCATTATCTCGAGGAATAG 1323 0.4029 MYSSGKELLSLSDIMSENNLQFLPPHWILVKPFGIPVGRIRPSQRQETQPPTPARSYMIEVHIMLSLKSHPPLLFSLFNKLSSHCLASFLSFSAQCHYQNFNETTSIVDDLNANFKFSRTQFIYVSNRVSRIRVRQNPLSVLNFFKEIGFTQPQIVSMIRQRPQILFTNVDKVLRPKVQFFQLSGFQGSDLCSFISKSPSILTHSLKKTLAPSVEAIRKIVCDQKDFIHVLHRSGWLLVNYKKFMDNVVFLESCGIAGPHLALLLKLDPRFFSSPQSFIGKRVSRAVELGFRENSRMLVYAIHTICCLSNKTFERKLNVINSFGFSKDEGLQMFRRAPTLFRTSEKKLKAGMEFFLHTVMLPKSALVYQPKLLMYCLEDRLLPRYKVFQLLKSKNLFKKVPSYIHMFCLPEDMFLDKYISRFRENAEDLLVAYKGHYLEE 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01805 440 SMART mt_12 363 394 IPR003690 GO:0003690|GO:0006355
Spst3g01805 440 SMART mt_12 262 292 IPR003690 GO:0003690|GO:0006355
Spst3g01805 440 SMART mt_12 331 362 IPR003690 GO:0003690|GO:0006355
Spst3g01805 440 SMART mt_12 156 187 IPR003690 GO:0003690|GO:0006355
Spst3g01805 440 SMART mt_12 296 326 IPR003690 GO:0003690|GO:0006355
Spst3g01805 440 SMART mt_12 192 223 IPR003690 GO:0003690|GO:0006355
Spst3g01805 440 Gene3D Transcription termination factor 3, mitochondrial 222 425 IPR038538 -
Spst3g01805 440 PANTHER CGI-12 PROTEIN-RELATED 104 421 IPR003690 GO:0003690|GO:0006355
Spst3g01805 440 FunFam Mitochondrial transcription termination factor-like 206 426 - -
Spst3g01805 440 Pfam mTERF 240 414 IPR003690 GO:0003690|GO:0006355
Spst3g01805 440 Pfam mTERF 142 232 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g01805 Spst-Chr3 26477855 26480157 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Spst3g01805 mTERF 4e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01805 K15031 - qsa:O6P43_021347 326.25