Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01793 ATGTCTCTCCCCAAAACCCTACTTCATCCCTCTTCTTTCTCTCTCTTCGTCACGATCACCACCATTGTGATGGTTGCGGTCGCGGATGACAGTGCCGTCATGTCCAATTTCCTGCAATCGCTGATGCCACCGCCTCCAGGTTGGTCTCAGACAACCCCATTCTGCCAATGGAAGGGTATCCAATGCGATTCGTCCAACCGCGTCACCAGCATAAGCCTGGCTTCAAAGTCACTCACCGGAACTTTGCCCTCCGATCTCAATTCCCTCTCCCAACTCCGCACTCTCTCCCTCCAAGACAATGCGCTCTCGGGGCCCCTCCCCTCCCTCGCCAAACTCTCCTTCCTTCAAACCGCCTACCTCAACCGCAACAACTTCTCCGCCGTCCCCTCCGCCGCCTTCGCCGCCCTCACCTCCCTCCAAACCCTCAGCCTCGCCTCCAACCCTTCTCTCTCGCCCTGGACCTTCCCCACCGACCTCACCGCCTCCACCAACCTAATCGACCTTGACCTCGCCACCGTTTCCCTCTCCGGTCCCTTACCTGACATCTTTGACAAATTCCCCTCTCTGCAGAACCTTCGCCTATCCTACAACAACCTCACCGGCAGTTTACCCTCCTCTCTCGCCGCGTCCACAATCGCCTCGCTCTGGCTCAACAACCAGGCCACCGGCTTGTCCGGTACCCTGGCCGTTCTCTCCAACATGACGGAGTTGAGCCAGGCCTGGCTCCACAAGAACCAGTTCACCGGTCCAATTCCCGATTTGTCCCAATGCAAGAGCTTGTTTGACTTGCAGCTCCGGGATAACCAGCTAACCGGTGTGGTTCCTGCTTCCTTGACGACTCTTTCGAGTTTGAAGAATGTTTCGCTGGATAACAACGAGCTTCAAGGGCCTGTGCCTACGTTTGGGAAGGGTGTGAAAGTGACTCTCGATGGGATCAATAGCTTTTGTCTCGATACTCCCGGTGATTGCGATCCCAGGGTGATGGTTTTGCTTCAGATTGCTGAGGCGTTCGGGTACCCCATTCGGTTGGCGAATGCATGGCAGGGGAATGGCCCTTGTAATGGCTGGAACTTTGTTGTGTGTTCTTCTGGGAAGATTGTTACTGTGAATTTCGGGAAGCAGGGTTTTCAGGGTACCATCTCGCCTGCATTTTCGAAATTGACTGATTTGAGGAGCTTGTTCCTCAATGGAAATAATTTGACCGGTTCTATTCCTGAGAGTTTGACCTTTTTGTCCCAGCTTCATACTCTTGATGTATCTGATAACAATCTCTCTGGAGAGGTTCCCAAGTTCCCGTCCATAGTGAAGTTAGTGACTACCGGTAATGCTATGCTTGGGAAAGCTCCTAGTCCTGGAGGTGGAGCAAATGGGTCTATTCCTTCAGGGTCTTCAGCCGGTGGAAGTGGTGGTGAATCTGCTAATGGTAGTTATTCTTTGTCGCCAGGTTGGATTGCTGGTATAGTTGCTATTGTTTTGTTTTTTATTGCAGTGCTTTTGTTTGTGTCTTGGAAGTGTTATGCCAAAAGGAAGCAGCGGAAGTTCAGGAGGGTTAATGGTCGTGAGAATGGCAAAGGAAGCTTTAAAATTGATTCTGTCAATGTTTCTAATGGGTATGGTTGTGTTCCTAGTGAGTTGCAAAGCCAGAGCAGTGGTGATCGCAGTGACCTTGCTGCTTTTGAAGGTGGAAATGCGACGATTTCAATCCAAGTTCTTCGACAGGTTACGAATAATTTCAGTGAGGAGAACATTTTAGGCAGGGGAGGTTTTGGAGTAGTTTACAAGGGGGAATTGCATGATGGAACGAAGATCGCTGTTAAAAGGATGGAATCTGTTGCAATGGGGAACAAAGGACTGAACGAGTTCCAAGCAGAGATTGCAGTTCTTAGTAAAGTTAGGCATAGGCATTTGGTTGCTCTTCTAGGGTATTGCATCAATGGAAATGAAAGGCTTTTGGTGTATGAGTATATGACTCAAGGTACATTAACACAGCACCTATTTGAGTGGCAGGAACATGGCTATGCCCCCTTGACATGGAAACAAAGGGTAACAATAGCTTTGGATGTTGCACGAGGGGTGGAATACTTGCACAGCTTAGCTCAACAAAGCTTCATTCACAGAGACTTAAAACCCTCGAACATACTACTAGGTGATGACATGAGAGCAAAGGTTGCAGATTTTGGGTTGGTTAAAAATGCACCAGATGGGAAGTATTCAGTTGAGACTCGGTTGGCCGGAACATTTGGATATCTTGCACCTGAATATGCAGCTACTGGAAGAGTAACAACCAAAGTGGATGTTTATGCATTTGGAGTAGTTTTGATGGAACTCGTTACCGGTAGAAAGACATTGGATGATACTGTACCAGATGAAAGGTCTCACTTGGTTACATGGTTTCGTAGGGTACTGATTAACAAAGAAAACATTCCAAAGGCAATTGATCAAATTCTTAACCCCGACGAGGAAACCATGGAGAGCATATATAAAGTGGCTGAACTAGCAGGCCATTGCACTGCTCGTGAACCGTACCAAAGGCCAGATATGGGTCATGCAGTGAATGTCTTGGTTCCTCTTGTTGAGCAATGGAAACCTACTAGTCATGAAGAAGAGGACGGCGCTGGCAGTGATCTTCAGATGAGCCTTCCACAAGCTCTACGAAGGTGGCAAGCCGATGAAGGCACTTCCTCAATATTTAATGATATATCCATCTCACAAACCCAATCAAGCATCCCCTCTAAACCTGCCGGATTTGCAGATTCCTTTGATTCAATGGATTGCCGGTGA 2781 0.4858 MSLPKTLLHPSSFSLFVTITTIVMVAVADDSAVMSNFLQSLMPPPPGWSQTTPFCQWKGIQCDSSNRVTSISLASKSLTGTLPSDLNSLSQLRTLSLQDNALSGPLPSLAKLSFLQTAYLNRNNFSAVPSAAFAALTSLQTLSLASNPSLSPWTFPTDLTASTNLIDLDLATVSLSGPLPDIFDKFPSLQNLRLSYNNLTGSLPSSLAASTIASLWLNNQATGLSGTLAVLSNMTELSQAWLHKNQFTGPIPDLSQCKSLFDLQLRDNQLTGVVPASLTTLSSLKNVSLDNNELQGPVPTFGKGVKVTLDGINSFCLDTPGDCDPRVMVLLQIAEAFGYPIRLANAWQGNGPCNGWNFVVCSSGKIVTVNFGKQGFQGTISPAFSKLTDLRSLFLNGNNLTGSIPESLTFLSQLHTLDVSDNNLSGEVPKFPSIVKLVTTGNAMLGKAPSPGGGANGSIPSGSSAGGSGGESANGSYSLSPGWIAGIVAIVLFFIAVLLFVSWKCYAKRKQRKFRRVNGRENGKGSFKIDSVNVSNGYGCVPSELQSQSSGDRSDLAAFEGGNATISIQVLRQVTNNFSEENILGRGGFGVVYKGELHDGTKIAVKRMESVAMGNKGLNEFQAEIAVLSKVRHRHLVALLGYCINGNERLLVYEYMTQGTLTQHLFEWQEHGYAPLTWKQRVTIALDVARGVEYLHSLAQQSFIHRDLKPSNILLGDDMRAKVADFGLVKNAPDGKYSVETRLAGTFGYLAPEYAATGRVTTKVDVYAFGVVLMELVTGRKTLDDTVPDERSHLVTWFRRVLINKENIPKAIDQILNPDEETMESIYKVAELAGHCTAREPYQRPDMGHAVNVLVPLVEQWKPTSHEEEDGAGSDLQMSLPQALRRWQADEGTSSIFNDISISQTQSSIPSKPAGFADSFDSMDCR 926
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01793 926 ProSitePatterns Protein kinases ATP-binding region signature. 584 606 IPR017441 GO:0005524
Spst3g01793 926 Pfam Protein tyrosine and serine/threonine kinase 581 851 IPR001245 GO:0004672|GO:0006468
Spst3g01793 926 MobiDBLite consensus disorder prediction 449 471 - -
Spst3g01793 926 SUPERFAMILY L domain-like 38 437 - -
Spst3g01793 926 FunFam Leucine-rich repeat receptor-like kinase 325 448 - -
Spst3g01793 926 ProSiteProfiles Protein kinase domain profile. 578 858 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst3g01793 926 MobiDBLite consensus disorder prediction 904 926 - -
Spst3g01793 926 SMART LRR_typ_2 186 209 IPR003591 -
Spst3g01793 926 SMART LRR_typ_2 387 411 IPR003591 -
Spst3g01793 926 SMART LRR_typ_2 136 157 IPR003591 -
Spst3g01793 926 SMART LRR_typ_2 112 135 IPR003591 -
Spst3g01793 926 FunFam receptor protein kinase TMK1 656 873 - -
Spst3g01793 926 SUPERFAMILY Protein kinase-like (PK-like) 558 854 IPR011009 -
Spst3g01793 926 SMART serkin_6 578 858 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst3g01793 926 PANTHER OSJNBA0070M12.3 PROTEIN 15 926 - -
Spst3g01793 926 ProSitePatterns Serine/Threonine protein kinases active-site signature. 703 715 IPR008271 GO:0004672|GO:0006468
Spst3g01793 926 FunFam receptor protein kinase TMK1 540 655 - -
Spst3g01793 926 Gene3D Ribonuclease Inhibitor 325 448 IPR032675 -
Spst3g01793 926 Gene3D Ribonuclease Inhibitor 29 321 IPR032675 -
Spst3g01793 926 CDD STKc_IRAK 584 857 - -
Spst3g01793 926 Gene3D Transferase(Phosphotransferase) domain 1 656 878 - -
Spst3g01793 926 Gene3D Phosphorylase Kinase; domain 1 541 655 - -
Spst3g01793 926 FunFam Receptor-like kinase TMK4 28 321 - -
Spst3g01793 926 MobiDBLite consensus disorder prediction 456 471 - -
Spst3g01793 926 Pfam Leucine rich repeat N-terminal domain 330 362 IPR013210 -
Spst3g01793 926 Pfam Leucine rich repeat N-terminal domain 35 63 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g01793 Spst-Chr3 25103317 25106771 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g01793 68 854 Receptor kinase-like Gene Family AT5G07280 33.374 1.82e-96 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Spst3g01793 PK_Tyr_Ser-Thr 4.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01793 K00924 - gmx:100286794 1511.89