Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01764 ATGGATCAAGCAAAAAGCATAGACAGCGGTGAGGTGTTAGATCATGCTGATGAAAGGGTGGGTGAGAATTTGAACCATTCGGTTGAAGGAAATACAATTGATGCAGGAGTTAGACATAGCTTGGGTGAAAGAGTTAATGTAAGTGGGGAAGATGGGGCTTCGCAAGAGATGTGCAATGATCTTGGTTTGAATGGGGAGCTAAAGGAGGGGCCCCAAGAAGTTAATGATCATAACATGGGTGACCCTCAAGAAATTAATGATACATTGCATAGGGTTGATCAAGGAACCAGTTATAGTTCAAGAAATTTGGTTAGTGGTGAACTACCTGAGACTTGTGCTGTAATTGATCCTTCCGCTCAGATTGAGTGTGTAAGTGGAGAAAATAGGAAATTGGAAGCAAAACCTAATGATTCAGGGTTGAGCAAGTTGTCCATGAAAGTGACAAAAGGGGTTTCTGAGATAGATAAAAATTCATGTGTGATTGATATAAACAGAGGTAGCTGCGACGGTTTTAGTGAGAATTTGGAAGGTGAAATGATTTGTAGGATTTGCCATCTGGCCTCTGGGCAACCATTAGAAGCAGCAGCTGTTGGCACTGCTGGTGGTGCTACTAATGATACTGATTTGATTCAGCTTGGTTGTGCATGTAAAGATGAGTTAGGCATTGCTCACAGTCATTGTGCCGAGGCATGGTTCAAGATTAAAGGAAACAGGTTGTGTGAAATATGTGGTGAGACTGCAAAAAATGTTTCGGACGTTAGTAGTGATCAGGGATTTATGGAAGAGTGGAATGATACTAGATTCTTGGGCAATGATAATACCTCATCCAGAAGGTTTGGAGGATGCTGGCGCGGACAACCATTTTGTAACTTCTTAATGGCATGCCTAGTAATAGCTTTTGTTCTACCATGGTTCTTTCGTGTAAATATGTTCTAG 936 0.4156 MDQAKSIDSGEVLDHADERVGENLNHSVEGNTIDAGVRHSLGERVNVSGEDGASQEMCNDLGLNGELKEGPQEVNDHNMGDPQEINDTLHRVDQGTSYSSRNLVSGELPETCAVIDPSAQIECVSGENRKLEAKPNDSGLSKLSMKVTKGVSEIDKNSCVIDINRGSCDGFSENLEGEMICRICHLASGQPLEAAAVGTAGGATNDTDLIQLGCACKDELGIAHSHCAEAWFKIKGNRLCEICGETAKNVSDVSSDQGFMEEWNDTRFLGNDNTSSRRFGGCWRGQPFCNFLMACLVIAFVLPWFFRVNMF 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01764 311 PANTHER ZINC FINGER, RING-CH-TYPE 76 311 - -
Spst3g01764 311 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 167 256 IPR013083 -
Spst3g01764 311 SMART ringv_2 180 244 IPR011016 GO:0008270
Spst3g01764 311 ProSiteProfiles Zinc finger RING-CH-type profile. 173 250 IPR011016 GO:0008270
Spst3g01764 311 Pfam RING-variant domain 202 243 IPR011016 GO:0008270
Spst3g01764 311 SUPERFAMILY RING/U-box 178 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g01764 Spst-Chr3 23712282 23714936 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g01764 161 310 C3H Transcription Factor Family AT5G05830 39.355 5.24e-27 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01764 - - gmx:100791129 543.502
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g01764 3 23712282 23714936 Spst3g01764 3 23712282 23714936 ECH
Spst3g01764 3 23712282 23714936 Spst6g00906 6 8338992 8341994 PCT