Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01758 ATGTCGGATGAATATGAGAGGAGTGAGGAACTGGTTGATGACACTTCAATGGGATCATCCCAGAAATGTTCATCCTTTGATTTGAATGAAGAAGCTAGTAGTGAAAATAACAACAATGATGATGAAAGTGACAAGGGATACGAGGAAGCTAAGGACGAAGGTACTTCAACAAATAAAAGTAGCAGCATAACAAGGGAAGGAAATCATGAACGAAGAGGTGGTGTGAGACAATACGTTAGATCAAAGATGCCTAGGCTTCGTTGGACACCTGAACTTCATCTATCCTTTGTGCATGCTGTTGAAAGGCTTGGAGGTCAAGAGAGAGCAACACCCAAATTGGTGCTTCAGCTAATGAATGTAAGAGGACTCAGCATTGCTCATGTCAAGAGTCATTTGCAGATGTATCGGAGCAAGAAACTCGATGAGGTTGGGCAAGTATTAGGTCAAACATACAAATCAACCCATGAACTTGGTCGTCTTTCTCATGTAGCCCATCAATCCATAAATCCTCGTCAACATTTTAAAATGGGGAATGGTGGAATTATTTTAGCAAGTGATTACAGCGAGCACAGTTATTTCCATGGTCTCTTGCATCCTTCCACCCTATCACATTCACATTCAAAAGTCATCGATTCAAGGCACCAACAATGGCACCTCAACAATCATCAAACTTTTAGAAGACCAAGTTACTTTAGCAACGAAGTTGTCGCCTCAACAGCATTACAAACGCAAGGAAGATCAATGTCTGCAAATCAAATTCAACTAATGGATGCTACCAGCATTGCTCCCATGAGACCAAGCCAATTTCTTGAAGAGAAAAGATGGCCTCCATTGGAAATTATGAACAATCATCCCTGGAAGAAAAGGTTACCTGCCACTATTACTTCCAATACTGAGTCACAATCAGTTGTACTTCATCAATTTGGCACCACTACTCCAGCATCTCTTAGACCAAGTGAGTTCAACTTCGGAAACAACACAAGAATCAGGGAATATCTATCTAATTCCGATGAGCATCGCAGCTATTCCAACAGTTTCAAGATAGATTTTGAACCTCCATTTCGGATTAAGTCGAATCAAGAGAAATTGCAGAAAGACAAGCAATGGGTACCTGATTTGAGACTGAGTTTAAGTCAGAGAGATGGCAACAGTGATGGCAAGACTGATGATCATTGCAGAGAAACCCAAGAAATCAACACGAAACTTTCACTTTCATAA 1218 0.4072 MSDEYERSEELVDDTSMGSSQKCSSFDLNEEASSENNNNDDESDKGYEEAKDEGTSTNKSSSITREGNHERRGGVRQYVRSKMPRLRWTPELHLSFVHAVERLGGQERATPKLVLQLMNVRGLSIAHVKSHLQMYRSKKLDEVGQVLGQTYKSTHELGRLSHVAHQSINPRQHFKMGNGGIILASDYSEHSYFHGLLHPSTLSHSHSKVIDSRHQQWHLNNHQTFRRPSYFSNEVVASTALQTQGRSMSANQIQLMDATSIAPMRPSQFLEEKRWPPLEIMNNHPWKKRLPATITSNTESQSVVLHQFGTTTPASLRPSEFNFGNNTRIREYLSNSDEHRSYSNSFKIDFEPPFRIKSNQEKLQKDKQWVPDLRLSLSQRDGNSDGKTDDHCRETQEINTKLSLS 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01758 405 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 80 140 IPR017930 -
Spst3g01758 405 MobiDBLite consensus disorder prediction 383 397 - -
Spst3g01758 405 Pfam Myb-like DNA-binding domain 86 136 IPR001005 -
Spst3g01758 405 Gene3D - 83 140 - -
Spst3g01758 405 MobiDBLite consensus disorder prediction 38 55 - -
Spst3g01758 405 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 54 220 IPR046955 GO:0003700
Spst3g01758 405 MobiDBLite consensus disorder prediction 361 405 - -
Spst3g01758 405 FunFam Myb family transcription factor 82 140 - -
Spst3g01758 405 MobiDBLite consensus disorder prediction 14 33 - -
Spst3g01758 405 SUPERFAMILY Homeodomain-like 82 138 IPR009057 -
Spst3g01758 405 MobiDBLite consensus disorder prediction 1 78 - -
Spst3g01758 405 NCBIfam myb-like DNA-binding domain, SHAQKYF class 84 139 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g01758 Spst-Chr3 23584412 23588661 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g01758 19 141 G2-like Transcription Factor Family AT2G42660 54.032 4.27e-34 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Spst3g01758 Myb_DNA-binding 2.9e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01758 - - gmx:100808625 695.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g01758 3 23584412 23588661 Spst3g01758 3 23584412 23588661 ECH
Spst6g00891 6 8198618 8201122 Spst3g01758 3 23584412 23588661 ECH
Spst3g01758 3 23584412 23588661 Spst6g00891 6 8198618 8201122 PCT