Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01732 ATGGGTCGTGGAAGGATACCCATGGATCTCATTGAGAAAGAAAAGGCTCGGAAAACAACATTTCAAAAGCGAAAGACCGGATTAATCAAGAAAGTTTATGAGTTTTCCACCCTTTGTTCAGTTGATGTTGGTGTAATTATCTTTGCCTCCAAGCGTCCAAAGGTGTATGATGTGGAAGAGTATTTCAGTGAAAGAATGAAAAGGATTGAAGGTGAGATTTCCAAAGTGCAGAAAGAGAAGATCCAAATCATGTACCCAACCTGGGATGACTCTTACAATGTTCTTGAAGAGGAACAACTGAGGATGTTTCTTAGTATTTTGGACGCTAAGCTTAATGCTTGTAACCAAAGGATGAATATGTTGAAGCGAGAGTCAAAGGAAAAAACAATAACAGACAAAGATGATCTACTTGTTCCCTCAGTAGCCCAACATAGCCATCACAATTTTATGCAGAACGTGTCTCAAACACAAATTTTCCCTCTTAATGATAACAGTCAAGTTCCATTTTATCCATGTCATCCAAGCCAAAGTTCTCTTTCTTCTTTGTTTCATTTTGGTCAAAATTGTACGCAATTGATAGAAAAGAATACAATGGTGGATTGGGGTCATCAGGTTGCCCTGTTTGTTGTTTTACCAATGGTATTGTGCCGGAAGCCTGATGCTCTTATTACCGTGTTGCCTACATTGAGGGAGAATACAAAAGCCTCTATAGGAGATCTCTCAATAGGTTTGTATGCTTGGTCACGAAATCTCCTACCCATAGTGATTGGCAAAAGTGGTAACCCCCAATCCAGGGATTTGGTTTTGCAGCTGATGGAAAAAATTTTGTCTACTCCAAAAGCCCGGCCTGTTCTAGTACATAGTGCTGTGAGAAAAGGGGAACGATTAATTCCTCCTCCTGCATTTGAAATTTTGCTCCGGGTTACTTTCCCTCCATCTTCAACTAGAGTAAAGGCTACTGAAAGATTTGAGGCCATATATGCCATTCTGAAAGAGGTGGTCTTGGAGGTTCTTCTGGAAGTAAAGCAATGA 1032 0.4021 MGRGRIPMDLIEKEKARKTTFQKRKTGLIKKVYEFSTLCSVDVGVIIFASKRPKVYDVEEYFSERMKRIEGEISKVQKEKIQIMYPTWDDSYNVLEEEQLRMFLSILDAKLNACNQRMNMLKRESKEKTITDKDDLLVPSVAQHSHHNFMQNVSQTQIFPLNDNSQVPFYPCHPSQSSLSSLFHFGQNCTQLIEKNTMVDWGHQVALFVVLPMVLCRKPDALITVLPTLRENTKASIGDLSIGLYAWSRNLLPIVIGKSGNPQSRDLVLQLMEKILSTPKARPVLVHSAVRKGERLIPPPAFEILLRVTFPPSSTRVKATERFEAIYAILKEVVLEVLLEVKQ 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01732 343 Gene3D - 13 80 IPR036879 GO:0003677|GO:0046983
Spst3g01732 343 PANTHER TRANSMEMBRANE PROTEIN 214 203 335 IPR019308 -
Spst3g01732 343 ProSiteProfiles MADS-box domain profile. 1 51 IPR002100 GO:0003677|GO:0046983
Spst3g01732 343 CDD MADS 2 58 - -
Spst3g01732 343 Coils Coil 104 124 - -
Spst3g01732 343 SMART madsneu2 1 61 IPR002100 GO:0003677|GO:0046983
Spst3g01732 343 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Spst3g01732 343 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Spst3g01732 343 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Spst3g01732 343 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 56 IPR002100 GO:0003677|GO:0046983
Spst3g01732 343 SUPERFAMILY SRF-like 2 84 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g01732 Spst-Chr3 22363723 22373084 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g01732 1 98 MADS-box Gene Family AT4G37940 37.864 1.92e-13 67.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Spst3g01732 SRF-TF 1.7e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01732 - - ccaj:109800518 265.003