Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01731 ATGGGTCGTGGAAGGATACCCATGAATCTCATTGAGAAAGAAAAGACTCGGAAAACAACATTTCAAAAGCGAAAAACCGGATTAATCAAGAAAGTTTATGAGTTTTCCACCCTTTGTTCAGTTGATGTTGGTGTAATTATCTTTGCCTCCAAGTATCTTGATGAACCTGAAACATGGCCACAAGATCCAAGAGAGGTTAACCGAATTATTCAAAAATATCTGAACACCACCAGTGATAGGCGTCCAAAGGTGTATGATGTGGAAGAGTATTTCAGTGAAAAAATGAAAAGGATTGAAGGTGAGATTTCCAAAGTGCAGAAAGAGAAGATCCAACTCATGTACCCAACCTGGGATGACTCTTACAACGTTCTTGAAGAGGAACAACTGAGGATGTTTCTTAGTATTTTGGACGCTAAGCTTAATGCTTGTAACCAAAGGATGAATATGTTGAAGCGAGAGTCAAAGGGAAAAACAATATCAGACAAAGATGATCTACTTGTTCCCTCAGTAGCCCCAAATAGTCATCACAATTTTATGCAGAATGTGTCTCAAACACAAATTTTCCCTCTTAATGATAAGAGTCAAGTTCCATTTTATCCATGTCATCCAAGCCAAAGTTCTCTTTCTTCTTTGTTTCATTTTGGTCAAAATTGTACGCAATTGATGGAAAAGAATACAATGGTGGATTGGGGTCATCAGGTTGGGGCTGCTACAAGTGATCACAAACTGGTTATACAACAGGAGGATCGATCCGACAAAAACCAAAACTCCTCACATTGTTATTACAATGGAAATATGCAAACAACGCAGTCATATAACAATGTTTCTTTTCAGTACGATGCAGTTTTCCAGAACTTATCAAATCAAGCAGGATCATCACAAGGATTTGAACCTAATGGTTTTCATGATTCAACTATGTTTCAACCTTATTTTTTCAACTCTCTTCATAGAAGAAAATAG 960 0.3729 MGRGRIPMNLIEKEKTRKTTFQKRKTGLIKKVYEFSTLCSVDVGVIIFASKYLDEPETWPQDPREVNRIIQKYLNTTSDRRPKVYDVEEYFSEKMKRIEGEISKVQKEKIQLMYPTWDDSYNVLEEEQLRMFLSILDAKLNACNQRMNMLKRESKGKTISDKDDLLVPSVAPNSHHNFMQNVSQTQIFPLNDKSQVPFYPCHPSQSSLSSLFHFGQNCTQLMEKNTMVDWGHQVGAATSDHKLVIQQEDRSDKNQNSSHCYYNGNMQTTQSYNNVSFQYDAVFQNLSNQAGSSQGFEPNGFHDSTMFQPYFFNSLHRRK 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01731 319 Coils Coil 133 153 - -
Spst3g01731 319 Gene3D - 13 99 IPR036879 GO:0003677|GO:0046983
Spst3g01731 319 ProSiteProfiles MADS-box domain profile. 1 51 IPR002100 GO:0003677|GO:0046983
Spst3g01731 319 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 50 IPR002100 GO:0003677|GO:0046983
Spst3g01731 319 SUPERFAMILY SRF-like 2 89 IPR036879 GO:0003677|GO:0046983
Spst3g01731 319 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Spst3g01731 319 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Spst3g01731 319 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Spst3g01731 319 PANTHER MADS BOX PROTEIN 3 145 - -
Spst3g01731 319 SMART madsneu2 1 61 IPR002100 GO:0003677|GO:0046983
Spst3g01731 319 CDD MADS_SRF_like 2 73 IPR033897 GO:0000981|GO:0000987|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g01731 Spst-Chr3 22314007 22314966 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g01731 1 146 Type I MADS-box Gene Family AT5G55690 37.086 2.87e-23 95.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Spst3g01731 SRF-TF 9.4e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01731 - - gmx:102660566 390.578