Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01703 ATGCAAATGAACCTTAAACTATGGTATTTTTCAAGCTTCACATGTCCCTATATATATGTCTATGTTAAGTCTAAGTTGATTGCAATTGCGTTAATGGGTATGGAACATCAAATCCAAAGGGCTAAGGATGACAGATTCTGTGAGAAACTGAAGATGAAGAATAAGCCCAAGTTTGTTGGAGTGAGACAAAGGGCTTCAGGGAAATGGGCAGCAGAAATCAAAGACACGTCAAAGAAGATTAGAATGTGGCTTGGCACTTATCAAACTGCAGAGGAAGCTGCTCGAGCTTATGATGAAGCTGCTTGTCTCCTTAGAGGTTCAAACACTCGCACCAATTTCTCTACTCATGGGTGTAGTAGCATTGCTACAAATTCTCCTATTTCACTAAAACTAAGAAATCTCCTTGATCGTAAAGCCATGTCAAATCAAGGCCAAGTTCAAAACCACTCTTCTAGTATAAGTCCAACTTTCCAAGGTGCAATTGGTCCAAATGCTAGTACCATCAATAACATCATGGTCATGGAAGAAACCTCAGCTTGTGGTGGTGAAGGTGAGTCTTTGTTTGTGGTTCAGAACCAAGTCTCTGATAATATGTATGCAGTAGATATGAATATGATCAATTGTGCGATGAGTGTCACACCAAATGCATCGCAGCTTGATTTCTCTTGGCCTCTGGCCCAACAAAGGATAAACAAATTACCTTTACCGAAAGATGGTCTGAATGTAGAAAGGCAATTATCAAACCTGGTATATGCCACGAATGAGTTCCATCATGTGGAGGATTCATATGAATATGAGTATGATTATGATGTGAATTATCCTCTCTCTCACTTTTTATGCTTCACATGA 849 0.3946 MQMNLKLWYFSSFTCPYIYVYVKSKLIAIALMGMEHQIQRAKDDRFCEKLKMKNKPKFVGVRQRASGKWAAEIKDTSKKIRMWLGTYQTAEEAARAYDEAACLLRGSNTRTNFSTHGCSSIATNSPISLKLRNLLDRKAMSNQGQVQNHSSSISPTFQGAIGPNASTINNIMVMEETSACGGEGESLFVVQNQVSDNMYAVDMNMINCAMSVTPNASQLDFSWPLAQQRINKLPLPKDGLNVERQLSNLVYATNEFHHVEDSYEYEYDYDVNYPLSHFLCFT 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01703 282 PRINTS Ethylene responsive element binding protein signature 58 69 IPR001471 GO:0003700|GO:0006355
Spst3g01703 282 PRINTS Ethylene responsive element binding protein signature 80 96 IPR001471 GO:0003700|GO:0006355
Spst3g01703 282 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 53 157 - -
Spst3g01703 282 FunFam ethylene-responsive transcription factor RAP2-11 56 115 - -
Spst3g01703 282 SUPERFAMILY DNA-binding domain 57 114 IPR016177 GO:0003677
Spst3g01703 282 SMART rav1_2 57 120 IPR001471 GO:0003700|GO:0006355
Spst3g01703 282 CDD AP2 56 113 IPR001471 GO:0003700|GO:0006355
Spst3g01703 282 Pfam AP2 domain 56 106 IPR001471 GO:0003700|GO:0006355
Spst3g01703 282 ProSiteProfiles AP2/ERF domain profile. 57 114 IPR001471 GO:0003700|GO:0006355
Spst3g01703 282 Gene3D AP2/ERF domain 57 116 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g01703 Spst-Chr3 20850804 20851652 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g01703 34 282 AP2-EREBP Transcription Factor Family AT5G19790 40.727 3.81e-40 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Spst3g01703 AP2 6.9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01703 K09286 - gmx:100809046 351.288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g01703 3 20850804 20851652 Spst3g01703 3 20850804 20851652 ECH