Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01670 ATGCGAGCTTCATGGGCTGATTTGGCTGCAAATTCTGCAGCTGAAAATGCAGGTCCCGGATTTCCTGCTAACAGTGTGGGAACTGGTAGCACTCTAGCTCCTTCACGACCAGTTTATGTTCCTCCCCATCTTAGGAACCGCCAGCCATCAGCAGATGTCCCCGCACCAGCATACAGTGGTCCTTCTTCTGGTTCTGTAGGCTCTAGTGCTGGTGCAGGAAATGCTGGATCCCGCTGGCCTGCACCCAGAAATGATTATCGTTCTGGGTACGGTGGTGGTGGACGCCCAGGTGGTTGGGGAAATAAAAGTGGTGGGTGGGATCGTGGCAGGGAACGGGAAGTCAATCCCTTTGAAGAAGAGAATAATGGTGAAGAGGCATTTAGTGAGCAGGAGAATACAGGAATAAATTTTGATGCATATGAGGACATTCCAGTGGAGACTAGTGGTGAAAATGTACCTCCACCTGTGAATACATTTGCAGAGATTGACCTGGGTGAAGCACTTAATCAGAATATAAGAAGGTGCAAATATGTGAAGCCAACACCTGTTCAGCGGCATGCCATACCAATATCCCTAGCTGGACGGGATTTGATGGCTTGTGCACAGACTGGTTCTGGAAAGACAGCTGCATTCTGTTTCCCGATCATCAGTGGAATTATGCGAGGCCAACCTGTCCAGAGGCCACCTCGTGGGGTGCGGACAGTGTATCCTCTAGCGCTTGTTCTCTCTCCAACGAGGGAGTTATCAATGCAAATACATGAAGAGGCCAAGAAGTTTTCATACCAAACTGGTGTTAGGGTGGTTGTTGCTTATGGTGGAGCACCAATAAACCAGCAGGTTGTTCAAACTCTGCGGGATCTTGAACGAGGGGTGGACATTCTTGTTGCAACTCCAGGAAGACTGGTAGATTTGCTGGAGAGAGCTAGAGTTTCACTGCAGATGATTCGATATTTGGCCTTGGATGAGGCAGATCGGATGCTGGATATGGGTTTTGAGCCACAAATAAGGAAGATTGTAGAGCAGATGGACATGCCTCCACCAGGTGTTAGACAGACTATGTTGTTCAGTGCAACATTTCCAAAAGAGATACAGAGACTGGCTTCTGATTTTCTTTCAAAATATATTTTCCTGGCTGTTGGAAGAGTGGGTTCAAGTACCGATTTAATTGTCCAAAGAGTTGAGTATGTTCAAGAGTCTGACAAGAGAAGTCACCTAATGGACCTTCTTCATGCACAGAGGGCAAATGGTGTACAGGGAAAGCAAGCTTTGACTTTAGTTTTTGTGGAGACAAAGAAGGGAGCTGATTCGCTGGAACACTGGTTGTGTCTTAATGGTTTTCCTGCAACTACTATTCATGGGGACAGGTCGCAGCAGGAAAGAGAGTTAGCATTGAGGTCATTTAAAAGTGGCAACACCCCCATATTGGTTGCTACGGATGTTGCTGCACGCGGTCTTGATATTCCCCATGTTGCTCATGTGGTCAACTTTGACCTGCCAAATGATATTGATGATTATGTACACCGAATTGGAAGAACAGGGCGAGCTGGAAAGAAAGGCCTTGCAACTGCATTCTTTAATGATAACAATTCATCACTAGCAAGAGCTTTAGCAGATCTGATGCAAGAAGCAAATCAAGAAGTACCTGCTTGGCTCTCACGGTATGCTGCTCGATCTTTTGGTGGAGGGAGGAATCGTCGATCAGGTGGTCGGTTTGGTAGTCGTGACTTTCGAAGAGAGGGCTCCTTTAGTAGAGGTTCTTCAGATTACTACAGTTCAGGAAACAGCAGTGGTGGATATGGAGGCTCTGGTGGGTATTCTGGAGGGTATGGTCCTGGCGTCACTAGTGCTTGGGACTGA 1857 0.4728 MRASWADLAANSAAENAGPGFPANSVGTGSTLAPSRPVYVPPHLRNRQPSADVPAPAYSGPSSGSVGSSAGAGNAGSRWPAPRNDYRSGYGGGGRPGGWGNKSGGWDRGREREVNPFEEENNGEEAFSEQENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEALNQNIRRCKYVKPTPVQRHAIPISLAGRDLMACAQTGSGKTAAFCFPIISGIMRGQPVQRPPRGVRTVYPLALVLSPTRELSMQIHEEAKKFSYQTGVRVVVAYGGAPINQQVVQTLRDLERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGVRQTMLFSATFPKEIQRLASDFLSKYIFLAVGRVGSSTDLIVQRVEYVQESDKRSHLMDLLHAQRANGVQGKQALTLVFVETKKGADSLEHWLCLNGFPATTIHGDRSQQERELALRSFKSGNTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKKGLATAFFNDNNSSLARALADLMQEANQEVPAWLSRYAARSFGGGRNRRSGGRFGSRDFRREGSFSRGSSDYYSSGNSSGGYGGSGGYSGGYGPGVTSAWD 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01670 618 MobiDBLite consensus disorder prediction 568 582 - -
Spst3g01670 618 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 388 555 IPR001650 -
Spst3g01670 618 CDD DEADc_DDX3_DDX4 158 383 IPR044763 GO:0003724|GO:0005524
Spst3g01670 618 MobiDBLite consensus disorder prediction 105 119 - -
Spst3g01670 618 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 238 533 IPR027417 -
Spst3g01670 618 SMART ultradead3 176 392 IPR014001 -
Spst3g01670 618 MobiDBLite consensus disorder prediction 564 618 - -
Spst3g01670 618 Gene3D - 112 379 IPR027417 -
Spst3g01670 618 FunFam ATP-dependent RNA helicase RhlB 380 558 - -
Spst3g01670 618 MobiDBLite consensus disorder prediction 584 601 - -
Spst3g01670 618 FunFam Probable ATP-dependent RNA helicase DDX4 119 379 - -
Spst3g01670 618 SMART helicmild6 435 516 IPR001650 -
Spst3g01670 618 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 127 555 - -
Spst3g01670 618 Pfam Helicase conserved C-terminal domain 401 516 IPR001650 -
Spst3g01670 618 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 188 377 IPR014001 -
Spst3g01670 618 Pfam DEAD/DEAH box helicase 181 366 IPR011545 GO:0003676|GO:0005524
Spst3g01670 618 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 157 185 IPR014014 GO:0003724
Spst3g01670 618 CDD SF2_C_DEAD 389 525 - -
Spst3g01670 618 Gene3D - 380 558 IPR027417 -
Spst3g01670 618 MobiDBLite consensus disorder prediction 1 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g01670 Spst-Chr3 20504507 20519680 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g01670 155 548 Eukaryotic Initiation Factors Gene Family AT3G19760 31.899 1.05e-60 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01670 K11594 - gmx:100795756 984.941