Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01659 ATGACATGGTGCAATGACTCAGATGAGGAGAGGGGAATTGAACTGGTTGCGCCCGCTATTACTCCTACAACTAATAACACTCTTGTTACTGACACAAAACCAACCGAAATTCGTAACATAACTTGCCCCTCATGTGGTCATAACATTGAATTCCAAGATCAGACTGGAATCAATGACTTGCCGGGGTTACCAGCTGGGGTGAAGTTTGATCCGAATGACCAAGAGATATTAGAGCATTTGGAAGCAAAGGTACTTTCTGATGTGCCCAAACTCCATCCCCTAATTGATGAGTTCATACCAACGCTTGAAGGGGAGAACGGGATCTGTTATACGCATCCAGAAAAGCTTCCAGGTGCAAGCAAAGATGGACAGATCCGGCACTTCTTTCACAGGCCATCCAAAGCATACACAACCGGAACAAGGAAGAGAAGAAAGGTTCACACTGATGAAGAGGGAAGCGAGACAAGGTGGCATAAAACAGGCAAAACCAGACCAGTGTTTGTGGGTGGTGCTGTGAAGGGTTTCAAAAAGATACTGGTCCTCTACACCAACTATGGGAGGCAAAAGAAGCCCGAGAAGACGAATTGGGTGATGCATCAGTACCATCTTGGCAGCAATGAAGAGGAGAAAGATGGAGAATTAGTGGTTTCAAAGGTTTTCTACCAGACACAACCTCGACAATGTGGGAATTCCATTATAAAGCAGGACCTGTATGATGAAGAAAGATTGACTAACCAAAGTGTCCATGATGAGAACATAATAGCCAGAAGTGCAACTCTAATGGACTACTACAACCCTTCTTTCATAAATTATGAGCATGTGGGTGGTCGCAATAATAGGGAAAGTTCACCTCAACTTATTCCAAATTTGGTCATGCAAGGTGATACCTCTTCTTTCATTCGATTAGCAATGGATGCCACCAAAGCCAGGCTGGACACAAAATAA 945 0.4402 MTWCNDSDEERGIELVAPAITPTTNNTLVTDTKPTEIRNITCPSCGHNIEFQDQTGINDLPGLPAGVKFDPNDQEILEHLEAKVLSDVPKLHPLIDEFIPTLEGENGICYTHPEKLPGASKDGQIRHFFHRPSKAYTTGTRKRRKVHTDEEGSETRWHKTGKTRPVFVGGAVKGFKKILVLYTNYGRQKKPEKTNWVMHQYHLGSNEEEKDGELVVSKVFYQTQPRQCGNSIIKQDLYDEERLTNQSVHDENIIARSATLMDYYNPSFINYEHVGGRNNRESSPQLIPNLVMQGDTSSFIRLAMDATKARLDTK 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01659 314 Pfam No apical meristem (NAM) protein 64 203 IPR003441 GO:0003677|GO:0006355
Spst3g01659 314 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 28 251 IPR044799 GO:0003700
Spst3g01659 314 MobiDBLite consensus disorder prediction 142 157 - -
Spst3g01659 314 ProSiteProfiles NAC domain profile. 63 222 IPR003441 GO:0003677|GO:0006355
Spst3g01659 314 MobiDBLite consensus disorder prediction 136 157 - -
Spst3g01659 314 Gene3D NAC domain 72 226 IPR036093 GO:0003677|GO:0006355
Spst3g01659 314 SUPERFAMILY NAC domain 58 222 IPR036093 GO:0003677|GO:0006355
Spst3g01659 314 FunFam NAC domain-containing protein 73 72 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g01659 Spst-Chr3 20087278 20090094 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g01659 1 232 NAC Transcription Factor Family AT4G28500 72.532 5.91e-125 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Spst3g01659 NAM 2.3e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01659 - - vra:106766970 603.208