Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01636 ATTAGGCAAGTTGCCATATTTAAGAAAACTAGGCCGTGTGTAGGAGAATTAGTGTCTTTGGCTTGGAAGGTTCAGTCCGTTGAAGAACTGCTGATGTCTAGAATCTTGTCACTGTCACCTGATATCTTCAGTGCAGCGGTTGCACTGCAATCTGCTATAGCATTTTTGGAGATGGCCGTTTTGTGCCTGAGGCCTGCCATTAAGGACTTTGAGGACCTGATACAAAGCAAGAGAACATTAGGCCAGGGATTTGGCAATGCTCCATCTGCACTTATGACAATGAGGAGAATGAGAACTTATATAGCCTTTGAAAACATAAGCAAAAATCCTGGAGCATCCAAGTTGGCCAGGTCTCTTTTTCGATCATTTCCGCATCAGATTCCCAAAAAGGTTGTATTATTTCAAAAGCCGGGTGATGGTTTTCCGCCAGATGGCCGTATCTTCTACAAGCTTGAGAATGTCCGAGGAGAATTTCATGATATTCATAAGGATTTTAATCCTTTCAAGTTCAATGTTCCATCCCCTGATGATATGGTGCATAATGGCCTGCATTCTTCCAAAATGGGATTGAAAGACAAAGTTACGAACAATAAAAGTTCGCAGCTGTCATCAAGCGTTAGAGAGAAGAATGAACCTTCTGTACAATCACATTCACATGCTGAATGTTCGGATAACTTATCATCCTTAATGCAAAAAAGCAAGCGGGATAGTTTAGCTGAGGGCAAGTTCTCAAAAAAAGCAGCAACTGATCTGCAGACAAGTGGTAAAACATCAAACAGCTTGCCAGGATCTATGCCAAAAGACAAAGTTGAAAACATTATTAAAACAAATTCTTCAAAAAATGGTACCATTGGTATTCAATCAAGTGAAGAGAAGTCAGTTGGTTTTTCTGTACTGTCAAAAGTCAAGGAAAGTGATAGCAATAGTTTCTCTTCTATCAAAGATGGAAAATCTGAAAGTATTTCCAGCAATTTCAACAACATGGCTGTTGATGTAAGATCTGGAAATTCAGACAATACTAATGCTAAGAAACCTCGTCCACATATTTCTTATAAGCCAGAAAAATGGATGCTCCCTGAACATGCTGAAGATACATTAACTCAGCTGAATCTTGCAATTGTTGGCCATGTTGATTCTGGAAAATCAACCCTATCTGGTAGGTTGCTGCACCTATTGGGACGGATTTCCCAGAAAGAAATGCATAAATATGAAAAGGAGGCCAAGTTACAGGGCAAGGGATCATTTGCTTATGCTTGGGCACTTGATGAAAGCCCTGAAGAAAGAGAAAGAGGAATAACTATGACAGTTGCTGTTGCTTATTTTGACACCAAGAAATATCATGTTGTTTTGCTCGACTCCCCTGGCCATAAAGATTTTGTCCCAAACATGATTTCTGGGGCAACACAAGCTGATGCTGCAATTCTTGTTATAGATGCCTCACTAGGTTCATTTGAAGCTGGTATGGATGGCAGCAAAGGGCAAACAAGGGAGCATGCACAACTTATCAGAAGCTTTGGTGTTGATCGAGTTATAGTTGCTGTAAATAAGATGGATACTGTTTCGTACTCCAAAGACCGATTTGAGTTTATAAGGCAGCAGCTTGGAGTTTTTCTCCACTCATGTGGTTTCAAAGATTCTTCTCTATCTTGGATTCCCATGAGTGCCATGGAAAATCAAAATTTGGTAGCCTCCCCTTCTGACACTAGTTTAAAAAACTGGTACGGTGGACCTTATCTTTTAGATGCGATTGACTCTCTCCAACCTCCTTCTAGAGAATTCTCAAAACCTTTACTAATGCCAGTATGTGATGTCATCAAATCAACAATGCTTGGACAGGTGTCTGCTTGTGGTAAACTGGAAGCAGGAGCTCTTCGGAATGGATCAAAGGTCTTGGTTATGCCTTCAGCTGTAGTGGGAACAGTACGCTCATTGGAGCGTGATTCTAATCCCTGTACTGTTGCTAGAGCTGGAGATAATGTATCTGTAACATTGCAAGGTGTCGATGGAAATCATGTGATGGCAGGAGATGTACTATGCCATCCTGACTTTCCAGTTGCAGTTGCTAAGCATTTGGAGTTGAAAGTGCTAGTGTTGGATGGTGCGAGTCCAGTACTGGTGGGCACACAGTTAGAGTTTCATATACACCATGCGAAGGAACCTGCTAGAGTTTCAAGAATATTGTCAGTACTTGATCCAAAGACTGGTAAGGTGACCAAAAAGTCGCCTCGCTGTCTCAATGCAAAGCAAAGTGCAGTAATTCAGGTGATTTTGCATGAGTCAGTCTGTGTGGTAGAGTTCTCTAGTTGTAGAGCTCTTGGAAGGGTGTCCCTAAGATCCCTGGGAAGAACAATTGCTGTTGGAGTTGTGACAAGAATAATTGAGGATGGAGATTAA 2394 0.4135 IRQVAIFKKTRPCVGELVSLAWKVQSVEELLMSRILSLSPDIFSAAVALQSAIAFLEMAVLCLRPAIKDFEDLIQSKRTLGQGFGNAPSALMTMRRMRTYIAFENISKNPGASKLARSLFRSFPHQIPKKVVLFQKPGDGFPPDGRIFYKLENVRGEFHDIHKDFNPFKFNVPSPDDMVHNGLHSSKMGLKDKVTNNKSSQLSSSVREKNEPSVQSHSHAECSDNLSSLMQKSKRDSLAEGKFSKKAATDLQTSGKTSNSLPGSMPKDKVENIIKTNSSKNGTIGIQSSEEKSVGFSVLSKVKESDSNSFSSIKDGKSESISSNFNNMAVDVRSGNSDNTNAKKPRPHISYKPEKWMLPEHAEDTLTQLNLAIVGHVDSGKSTLSGRLLHLLGRISQKEMHKYEKEAKLQGKGSFAYAWALDESPEERERGITMTVAVAYFDTKKYHVVLLDSPGHKDFVPNMISGATQADAAILVIDASLGSFEAGMDGSKGQTREHAQLIRSFGVDRVIVAVNKMDTVSYSKDRFEFIRQQLGVFLHSCGFKDSSLSWIPMSAMENQNLVASPSDTSLKNWYGGPYLLDAIDSLQPPSREFSKPLLMPVCDVIKSTMLGQVSACGKLEAGALRNGSKVLVMPSAVVGTVRSLERDSNPCTVARAGDNVSVTLQGVDGNHVMAGDVLCHPDFPVAVAKHLELKVLVLDGASPVLVGTQLEFHIHHAKEPARVSRILSVLDPKTGKVTKKSPRCLNAKQSAVIQVILHESVCVVEFSSCRALGRVSLRSLGRTIAVGVVTRIIEDGD 797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01636 797 CDD EF1_alpha 370 589 - -
Spst3g01636 797 Gene3D - 357 590 IPR027417 -
Spst3g01636 797 Pfam Elongation factor Tu GTP binding domain 369 585 IPR000795 GO:0003924|GO:0005525
Spst3g01636 797 CDD HBS1_C_III 684 792 - -
Spst3g01636 797 MobiDBLite consensus disorder prediction 179 268 - -
Spst3g01636 797 MobiDBLite consensus disorder prediction 190 234 - -
Spst3g01636 797 CDD HBS1-like_II 596 680 - -
Spst3g01636 797 PANTHER TRANSLATION FACTOR 365 792 - -
Spst3g01636 797 FunFam elongation factor 1-alpha isoform X4 687 796 - -
Spst3g01636 797 Gene3D Translation factors 594 683 - -
Spst3g01636 797 Pfam Elongation factor Tu domain 2 617 679 IPR004161 GO:0005525
Spst3g01636 797 Pfam Elongation factor Tu C-terminal domain 686 792 IPR004160 -
Spst3g01636 797 PRINTS GTP-binding elongation factor signature 449 459 IPR000795 GO:0003924|GO:0005525
Spst3g01636 797 PRINTS GTP-binding elongation factor signature 429 437 IPR000795 GO:0003924|GO:0005525
Spst3g01636 797 PRINTS GTP-binding elongation factor signature 465 476 IPR000795 GO:0003924|GO:0005525
Spst3g01636 797 PRINTS GTP-binding elongation factor signature 370 383 IPR000795 GO:0003924|GO:0005525
Spst3g01636 797 PRINTS GTP-binding elongation factor signature 510 519 IPR000795 GO:0003924|GO:0005525
Spst3g01636 797 FunFam Translation elongation factor EF-1 593 683 - -
Spst3g01636 797 MobiDBLite consensus disorder prediction 247 268 - -
Spst3g01636 797 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 689 793 IPR009001 -
Spst3g01636 797 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 366 591 IPR000795 GO:0003924|GO:0005525
Spst3g01636 797 FunFam Elongation factor 1 alpha-like protein 359 590 - -
Spst3g01636 797 Gene3D Translation factors 687 796 - -
Spst3g01636 797 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 368 611 IPR027417 -
Spst3g01636 797 SUPERFAMILY Translation proteins 588 683 IPR009000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g01636 Spst-Chr3 19666953 19676648 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g01636 161 795 Eukaryotic Initiation Factors Gene Family AT5G10630 60.440 0.0 757
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01636 K14416 - gmx:100801724 1155.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g01030 6 9429719 9432710 Spst3g01636 3 19666953 19676648 PCT