Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01631 ATGGGTGCACATGCAAAGAAAGCTATGAAGAAGAACCTCAAAAGGGTTTCGTCTAATAAGCCGTCTCAGGGTGCTGATTTTTTGCCCTTGGAAGGTGGTTCTGCTCGCAAGATAGGAGAACAGAAGCCGCCAGAGAATACCGCCACGGTTTTGTACGTGTCGAGGATTCCGCATGGATTTTATGAGAAGGAAATGGAAGGTTATTTTGGGCAATTTGGAACCATCAAGAGGTTGAGAATCGCGAGAAATAAAAAGACGGGAAAATCAAGACATTTTGGGTACATAGAATTTGAATCTCCTGAGGTAGCAAAAATTGTAGCTGATACTATGCACAATTATCTCCTCTTTGAACATCTTCTACAAGTTTTTGTGGTACCTCCAGAGCATGTCCATTCAAGATTATGGAGAGGATTCAATTACCGTCACAAGCCATTGGATTATGTCCAAATTGAACGGAAGCGTCATGACAAGGAAAGAACCTTGGAAGAGCACAAGAAAATGGTGGACAGGATTCTAAAGCATGACCAAAAGCGACGTAAAAGAATAGAGGCTGCTGGCGTAGATTACGAATGCCCTGAGATTATCGGTAACATCCACCCTGCTCCAAAGAAAATAAAGTTTGATGACTAA 630 0.4222 MGAHAKKAMKKNLKRVSSNKPSQGADFLPLEGGSARKIGEQKPPENTATVLYVSRIPHGFYEKEMEGYFGQFGTIKRLRIARNKKTGKSRHFGYIEFESPEVAKIVADTMHNYLLFEHLLQVFVVPPEHVHSRLWRGFNYRHKPLDYVQIERKRHDKERTLEEHKKMVDRILKHDQKRRKRIEAAGVDYECPEIIGNIHPAPKKIKFDD 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01631 209 SMART rrm1_1 50 123 IPR000504 GO:0003723
Spst3g01631 209 Coils Coil 147 167 - -
Spst3g01631 209 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 51 118 IPR000504 GO:0003723
Spst3g01631 209 PANTHER MKI67 FHA DOMAIN-INTERACTING NUCLEOLAR PHOSPHOPROTEIN 5 208 - -
Spst3g01631 209 SUPERFAMILY RNA-binding domain, RBD 26 138 IPR035979 GO:0003676
Spst3g01631 209 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 49 127 IPR000504 GO:0003723
Spst3g01631 209 MobiDBLite consensus disorder prediction 1 41 - -
Spst3g01631 209 CDD RRM_NIFK_like 50 122 - -
Spst3g01631 209 Gene3D - 4 123 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g01631 Spst-Chr3 19635485 19637876 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g01631 49 122 Eukaryotic Initiation Factors Gene Family AT1G71770 32.432 7.75e-07 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01631 K14838 - gmx:100778780 374.4