LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Spst3g01601	ATGGTTTCGTTTTCACCAGCTCGCACAGGTTTCGTTTTCACCAGCGCGCACTCTTTTTGTCTAGTTTTGCGAGATACGCAGTCGTTTGCATTCTTCTATGAATTGCAGTTTGAACGATTGTTGGCTTCAAAGGTGGCAATGAGTGTCTCAGGTAAAAGAAGAGTGAAGGATTTATTGCTTCAAAAGGATAATCGCTTTTGTGCTGATTGTAATGCTCCAGATCCTAAATGGGCATCAGCGAATATTGGAGTTTTTGTCTGCTTAAAATGCTGTGGTGTGCACAGAAGTCTTGGTTCTCATATATCAAAGATTTTGTCTGTGACATTGGATGAATGGTCAAATGAGGAAATAGATGCAATGATTGAAGTGGGAGGAAATTCTTCTGCTAATTCAATTTATGAGGCTTTTATTCCACCTGGATGTACAAAACCTGGACCAGATGCCAGTCATGAGCAGCGTGCAAAATTCATCCGGTTAAAGTATGAGCAGCAAGAATTTTTGAAACCTAGTTTGCGCATTATGTCAGATAAAACCAATCCCCGGGCAAATATTAACAAAGGGCTTATGGATAATTTTCTAAGTAGTAGTTGTTCACAGAATCAGGACGGAAAGGGAAGATCTATTGGAAAGTTGAAGGTAAAAGTGATCAAAGGAACGGATTTAGCTATCAGAGATATGATGACAAGTGATCCATATGTTATCTTCACACTTGGCCAACAGACTGTTCAGACAACTGTAGTAAAGAGTAATCTGAATCCAGTCTGGAATGAAGAACTTATGCTGTCTGTTAATCAGAAATTTGGATTATTGAATTTGAAGGTATTTGATTATGACTTATTTTCATGTGATGATATAATGGGGGAAGCAGACATAGATCTTCAACCCCTGATTACATCTGCAATGACATATGGAGATCCTAGCATGTTTGAGAATATGCAGATAGGAAAATGGCTGAAATCCCATGACAATGCGCTTATAGATGATAGCCCGGTCAATATTGTTGATGGTAAGGTTCAACAGGAGATGACAATCAAGCTCCAGAACGTTGAATCTGGAGAATTAGACTTAGCACTTGAGTGGATACCTATTGAGTCTTGA	1098	0.3898	MVSFSPARTGFVFTSAHSFCLVLRDTQSFAFFYELQFERLLASKVAMSVSGKRRVKDLLLQKDNRFCADCNAPDPKWASANIGVFVCLKCCGVHRSLGSHISKILSVTLDEWSNEEIDAMIEVGGNSSANSIYEAFIPPGCTKPGPDASHEQRAKFIRLKYEQQEFLKPSLRIMSDKTNPRANINKGLMDNFLSSSCSQNQDGKGRSIGKLKVKVIKGTDLAIRDMMTSDPYVIFTLGQQTVQTTVVKSNLNPVWNEELMLSVNQKFGLLNLKVFDYDLFSCDDIMGEADIDLQPLITSAMTYGDPSMFENMQIGKWLKSHDNALIDDSPVNIVDGKVQQEMTIKLQNVESGELDLALEWIPIES	365

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Spst3g01601	365	Gene3D	Arf GTPase activating protein	37	173	IPR038508	-
	Spst3g01601	365	PANTHER	ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12	49	364	IPR044518	GO:0005096\|GO:0005543
	Spst3g01601	365	ProSiteProfiles	ARF GTPase-activating proteins domain profile.	52	180	IPR001164	GO:0005096
	Spst3g01601	365	PRINTS	HIV Rev interacting protein signature	104	125	IPR001164	GO:0005096
	Spst3g01601	365	PRINTS	HIV Rev interacting protein signature	83	100	IPR001164	GO:0005096
	Spst3g01601	365	PRINTS	HIV Rev interacting protein signature	64	83	IPR001164	GO:0005096
	Spst3g01601	365	Pfam	Putative GTPase activating protein for Arf	53	168	IPR001164	GO:0005096
	Spst3g01601	365	SUPERFAMILY	C2 domain (Calcium/lipid-binding domain, CaLB)	209	350	IPR035892	-
	Spst3g01601	365	SMART	arf_gap_3	54	174	IPR001164	GO:0005096
	Spst3g01601	365	CDD	C2_ArfGAP	208	352	-	-
	Spst3g01601	365	FunFam	ADP-ribosylation factor GTPase-activating protein AGD12	207	365	-	-
	Spst3g01601	365	SUPERFAMILY	ArfGap/RecO-like zinc finger	52	169	IPR037278	-
	Spst3g01601	365	Pfam	C2 domain	209	299	IPR000008	-
	Spst3g01601	365	ProSiteProfiles	C2 domain profile.	189	307	IPR000008	-
	Spst3g01601	365	SMART	C2_3c	210	305	IPR000008	-
	Spst3g01601	365	Gene3D	C2 domain	204	365	IPR035892	-
	Spst3g01601	365	FunFam	Arf-GAP with dual PH domain-containing protein 1	47	175	-	-
	Spst3g01601	365	CDD	ArfGap	55	161	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Spst3g01601	Spst-Chr3	19411940	19424527	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Spst3g01601	50	364	C2H2 Transcription Factor Family	AT4G21160	70.062	3.26e-173	483

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Spst3g01601	K12486		-	gmx:100777084	516.924