Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01599 ATGGCGGATGCACCAACTTGGAACTCCAACCTCCATTCCTTGCTTTCCCTCTCTTTTGAATTTCTGATTAAGATTAGTGAAAAGTTTGGACAGTGTAACAACCAAAATGTTTATGCAGATAATGAAGATGATGGACAGCAGCAGTCAGAATCACAAGTGCAGTCCCCATCTGCGAATGGAATTTCTGATTCTGGTATTAGTACCCAGAATCTCAATGTACAGTATGCAACACCTGGACAGCTTGGAACTGGGCATGCAATGGTACCACCTGTGTATCCATATCCAGATCCTTACTATAGAAGCATCTTTGCTCCTTATGATACTCAATCTTATCCCCCGCAAGCCTATAGTGGACAGCCAATGGTCCATCTTCAGTTAATGGGAATTCAGCAAGCTGGTGTTCCTCTGCCAACTGATGCAGTTGAGGAGCCCGTGTTTGTCAATGCAAAACAATATCACGGTATATTGAGACGTAGACAATCCCGTGCAAAAGCTGAATCAGAAAATAAAGCTATAAGGAATAGGAAGCCATACTTGCATGAATCTCGACACATGCACGCACTGAGAAGACCAAGAGGATGTGGTGGTCGGTTTCTGAATTCAAAGAAAGAAGAGAATCAGCATAATGATGTTGCATCAGCTGATATATCACAATCGAATATCAATCTCAATTCTGATAAAAATGATCACACGTCGTCAGATAGGACATCCTAA 714 0.4202 MADAPTWNSNLHSLLSLSFEFLIKISEKFGQCNNQNVYADNEDDGQQQSESQVQSPSANGISDSGISTQNLNVQYATPGQLGTGHAMVPPVYPYPDPYYRSIFAPYDTQSYPPQAYSGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKAIRNRKPYLHESRHMHALRRPRGCGGRFLNSKKEENQHNDVASADISQSNINLNSDKNDHTSSDRTS 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01599 237 ProSitePatterns NF-YA/HAP2 subunit signature. 146 166 IPR018362 GO:0003677|GO:0016602
Spst3g01599 237 SMART cbf3 140 201 IPR001289 GO:0003700|GO:0006355
Spst3g01599 237 ProSiteProfiles NF-YA/HAP2 family profile. 141 201 IPR001289 GO:0003700|GO:0006355
Spst3g01599 237 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 41 236 IPR001289 GO:0003700|GO:0006355
Spst3g01599 237 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 143 198 IPR001289 GO:0003700|GO:0006355
Spst3g01599 237 Gene3D - 141 202 - -
Spst3g01599 237 MobiDBLite consensus disorder prediction 205 237 - -
Spst3g01599 237 MobiDBLite consensus disorder prediction 211 227 - -
Spst3g01599 237 PRINTS CCAAT-binding transcription factor subunit B signature 175 198 IPR001289 GO:0003700|GO:0006355
Spst3g01599 237 PRINTS CCAAT-binding transcription factor subunit B signature 144 166 IPR001289 GO:0003700|GO:0006355
Spst3g01599 237 MobiDBLite consensus disorder prediction 36 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g01599 Spst-Chr3 19399511 19408788 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g01599 44 237 CCAAT-HAP2 Transcription Factor Family AT1G30500 57.732 5.15e-70 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Spst3g01599 CBFB_NFYA 4e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01599 K08064 - gmx:100499754 361.688