Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01596 ATGGCACTTTGTATGCAGAGAGATTCAGTATTGAATAAGCTCATGGATTGTGGCAAGTATGTGAGGTACACACCAGAGCAGGTGGAGGCTTTGGAGAGGGTGTATGCGGAGTGTCCCAAGCCTAGTTCTTCCAGAAGGCAACAACTCATTAGGGAGTGCCCCATCCTTTCCAACATTGAACAAAAACAGATCAAAGTGTGGTTCCAGAATCGCAGATGTCGGGAAAAGCAGAGGAAGGAAGCATCTCGTCTTCAGACAGTGAATAGAAAGCTGTCTGCAATGAACAAGTTGTTAATGGAAGAGAATGACCGTCTGCAGAAGCAGGTCTCACAGTTGGTGTATGATAATGGATACATGAAACAACAAATACACACTGCATCTGCTACTACTGACAATAGCTGTGAGTCCGTGGTAATGAGTGGTCAGAACCAACAGCAAAACCCCAAAACTCAGCATCCCCAATGGGATGCCAACAACCCAGCTGGTCTTCTTGCAATTGCTCAAGAGACCCTGGCGGAGTTCCTTTCCAAAGCTACTGGAACTGCTGTCAACTGGGTCCAGATGATTGGGATGAAGCCTGGTCCGGATTCTATTGGAATCGTTGCTGTTTCCCGCAACTGTACTGGGGTAGCAGCAAGAGCCTGTGGCCTTGTGAGCCTGGAGCCCACAAAGGTTGCAGAGATTCTCAAAGATCGTCCATCATGGTATCGTGACTGTCGATGCCTCAATGTATTGAGCGTAGTCCCCATAGGGAATGGGGGCACAATAGAGCTCATGTACATGCAGACATATGCACCAACAACCTTGGCAGCTGCAAGAGACTTCTGGACTCTAAGATACACTACAACATTGGAAGATGGAAGTCTTGTGATTTGTGAAAGGTCTTTGACTTCTTTAACTGGTGGCCCAACAGGGCCTCCTGCTTCAAACTTTGTTAGAGGTGAAGTGCTTCCTAGTGGATATCTAATTAGATCCTGTGAGGGTGGAGGATCTATAATTCACATTGTTGATCACGTTGATTTAGATGTTTGGAGTGTTCCTGAAGTACTGAGGCCCCTCTATGAATCTTCAAAATTCTTGGCTCAGAAATTGACTACTGCTGCCTTGCGACATGTAAGACAAATTGCACAAGAATCAAGTGGAGAAGTTCATTATGGTGGGGGTCGTCAACCTGCTGTCTTGAGGACCTTTAGTCAAAGGCTTTGCAAAGGGTTCAATGATGCTGTCAATGGCTTTGCGGATGATGGTTGGTCATTGATGGGTAATGATGGTGGGGGAGATGTGACTATAGCCATAAACTCATCTTCCAACAAGTTTTCTGGTTCTCATTACAATGCATCAATGCTTCCAACATTTGGAGGCGGGGTTCTATGTGCCAAGGCATCAATGCTCCTGCAGAATGTTCCTCCTGCTTTGCTTGTTCGATTTTTAAGGGAGCATCGTTCTGAGTGGGCTGATTATGGGGTTGATGCATACTCTGCTGCGTGTCTTAAAGCCAGTCCTTATGCAGCTCCTTGTGCAAGACCTAGTGGCTTCTCGAGCAGCCAGGTCATTTTGCCGCTTGCTCATACTATTGAGCATGAGGAGTTCTTGGAGGTAGTTCGTATTGAGGGTAATGCATTTCCCCCTGATGATGTTGGTTTGGCATGTGATATGTATCAATTGCAGCTGTGCAGTGGAGTCGATGAAAATGCAATTGGAGCATGTGCACAGCTTGTGTTTGCACCTATCGATGAATCTTTTGCAGATGATGCTCTGTTGCTGCCTTCTGGTTTCCGCATCATACCATTGGATTCCAAAATGGATGGTCCAGCTTCAACTAGGACATTGGATTTGGCATCAGCACTAGATATAGGATCTGCTAATGCCCGTCCTGCGGGTGAAAGTGATTTGAATAACTACAACCTTAGGTCGGTTCTCACAATTGCATTCCAGTTTACTTTTGAAAACCATTTGCGGGACAATGTGGCTGTTATGGCTCGCCAATATGTACGCAATGTGGTTCGATCAGTTCAGAGGGTTGCCATGGCAATTGCACCCTCTCGGCTCAGTACACAGGTGGGGCCAAAATCACTTCCTGGTCCACCAGAGGCTCTTACCTTGGCAAGATGGATCTGCAGAAGCTACAGGCTCCACACATGCGCAGAGCTTTTTAGAGTTGAGTCCACATCTGGTGATGCAATCTTGAATCAACTTTGGCACCATTCAGATGCAATATTATGCTGTTCTGTAAAAACTAATGCATCTCCAGTGTTCACCTTTGCAAACCAAGCTGGACTTGACATGCTTGAAACCACTCTTGTTGCTCTTCAAGACATAATGCTGGATAAAGTTCTTGATGAATCTGGCAGGAAGGTTCTCTGCATTGAGTTCTCCAAGATAATGCAACAGGGGTTTGCATATCTGCCAGCAGGAATATGTGTGTCAAGTATGAATCGGCCAGTGTCCTATGAGCAGGCCATTGCATGCAAAGTTCTGGATGATGATGATTCCAATCACTGTCTTGCCTTTGTGTTCATGAACTGGTCTTTTGTCTAA 2538 0.4594 MALCMQRDSVLNKLMDCGKYVRYTPEQVEALERVYAECPKPSSSRRQQLIRECPILSNIEQKQIKVWFQNRRCREKQRKEASRLQTVNRKLSAMNKLLMEENDRLQKQVSQLVYDNGYMKQQIHTASATTDNSCESVVMSGQNQQQNPKTQHPQWDANNPAGLLAIAQETLAEFLSKATGTAVNWVQMIGMKPGPDSIGIVAVSRNCTGVAARACGLVSLEPTKVAEILKDRPSWYRDCRCLNVLSVVPIGNGGTIELMYMQTYAPTTLAAARDFWTLRYTTTLEDGSLVICERSLTSLTGGPTGPPASNFVRGEVLPSGYLIRSCEGGGSIIHIVDHVDLDVWSVPEVLRPLYESSKFLAQKLTTAALRHVRQIAQESSGEVHYGGGRQPAVLRTFSQRLCKGFNDAVNGFADDGWSLMGNDGGGDVTIAINSSSNKFSGSHYNASMLPTFGGGVLCAKASMLLQNVPPALLVRFLREHRSEWADYGVDAYSAACLKASPYAAPCARPSGFSSSQVILPLAHTIEHEEFLEVVRIEGNAFPPDDVGLACDMYQLQLCSGVDENAIGACAQLVFAPIDESFADDALLLPSGFRIIPLDSKMDGPASTRTLDLASALDIGSANARPAGESDLNNYNLRSVLTIAFQFTFENHLRDNVAVMARQYVRNVVRSVQRVAMAIAPSRLSTQVGPKSLPGPPEALTLARWICRSYRLHTCAELFRVESTSGDAILNQLWHHSDAILCCSVKTNASPVFTFANQAGLDMLETTLVALQDIMLDKVLDESGRKVLCIEFSKIMQQGFAYLPAGICVSSMNRPVSYEQAIACKVLDDDDSNHCLAFVFMNWSFV 845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01596 845 SMART HOX_1 16 82 IPR001356 GO:0003677
Spst3g01596 845 CDD homeodomain 19 79 IPR001356 GO:0003677
Spst3g01596 845 SUPERFAMILY Bet v1-like 166 377 - -
Spst3g01596 845 Pfam MEKHLA domain 700 844 IPR013978 -
Spst3g01596 845 CDD bZIP 71 110 - -
Spst3g01596 845 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 15 845 IPR044830 GO:0003700
Spst3g01596 845 SMART START_1 165 375 IPR002913 GO:0008289
Spst3g01596 845 Gene3D - 15 85 - -
Spst3g01596 845 Gene3D - 189 377 IPR023393 -
Spst3g01596 845 FunFam Homeobox-leucine zipper protein REVOLUTA 19 74 - -
Spst3g01596 845 ProSiteProfiles 'Homeobox' domain profile. 22 78 IPR001356 GO:0003677
Spst3g01596 845 Pfam Homeodomain 20 77 IPR001356 GO:0003677
Spst3g01596 845 Pfam START domain 166 374 IPR002913 GO:0008289
Spst3g01596 845 CDD START_ArGLABRA2_like 160 376 - -
Spst3g01596 845 SUPERFAMILY Homeodomain-like 19 81 IPR009057 -
Spst3g01596 845 Coils Coil 84 108 - -
Spst3g01596 845 ProSiteProfiles START domain profile. 156 384 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g01596 Spst-Chr3 19368458 19374170 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g01596 5 845 Homeobox Transcription Factor Family AT2G34710 77.660 0.0 1338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Spst3g01596 START 6.6e-51 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01596 K09338 - gmx:100807637 1575.07