Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01587 CAAAACCAGGTAACCAAACAAAGGAATGATCATGATAGTAAGTTACCATCAAATCCTGCGGAAGTAGAAGACCTACGCCGTGACTCAGCTGCAAATCCATTGATTGTATTCACTTATGATGAGTTGAAGATAATAACTGCAAATTTTAGGCCAGATCGTGTGTTGGGGGGAGGAGGATTTGGAAGTGTGTATAAAGGGTTCATTTCTGAGGAGTTAAGGCAGGGGCTTCCTACCCTTGCTGTAGCTGTTAAGGTTCATGACGGTGACAATAGCCATCAAGGGCACAGAGAATGGCTGGCAGAAGTCATATTTTTGGGGCAGCTTTCACATCCAAATCTAGTCAAATTAGTTGGATACTGCTGCGAGGATGAACATAGGGTACTGATATATGAGTACATGTCCCGGGGAAGTGTGGAACACAACTTGTTCTCAAAAATTTTGCTTCCCATGCCATGGTCCATTAGAATGAAGATTGCATTTGGTGCTGCTAAGGGACTTGCATTTCTTCATGAAGCAGAGAAACCTGTCATATATCGTGATTTCAAGACATCAAACATTTTATTAGACCAGGACTACAATGCAAAACTTTCTGACTTTGGCCTTGCTAAGGATGGACCAGTTGGAGACAAATCACATGTTTCTACACGAGTAATGGGAACATATGGTTATGCAGCACCTGAATACATAATGACAGGTCATCTGACTCCAAGAAGTGATGTTTACAGTTTTGGGGTTGTTCTTCTTGAACTTCTCACAGGAAGAAAATCTTTAGACAAGTTAAGACCTGCTAGAGAGCAGAACCTTGCAGAATGGGCTCTGCCTTTGCTGAAGGAAAAGAAGAAATTTCTAAACATAATAGATCCAAGGCTGGATGGTGATTATCCAATTAAAGCAGTTCACAAGGCTGCAATGCTTGCATACCATTGCTTGAACCGCAATCCAAAAGCAAGGCCTCTAATGCGAGATATTGTGGACTCATTGGAGCCTTTGCAGGCACACACAGAGGTCTCTATTGGCAAAACATTGACCATAATCAGTGAGGTTCCCGAATCTGTGACATTGCCAAGAACCACCCAAATTCACCCAACCTTATTTTCTTCCTCCACCAAGTTCTTTTCTTCCAGAAGCCCCTCGTATTGGGGTGTTTCCTTTTGTTTCTCAAACACCCTTTTGTCAAGACCGTTGCTTTTTGCTGTTAAGGCTTCATCTGGGGTTGGGTCAGAAGCATCCAAACAGGAGAGTGACAGGAGTGAAGAAGAAGAGGAGGAACCGTATGAAGAGTACGAGGTTGAGATTGAGCAGCCTTTTGGACTCAAATTTGCAAAGGGTAGGGATGGAGGAACTTACATTGATGCTATTGCACCGGGAGGATCAGCTGATAAGGCTGGAGTCTTCACTGTAGGGGATAAAGTCCTTGCTACCAGTGCAGTTTTTGGGACTGAAATTTGGCCAGCTGCAGAATATGGAAGAACAATGTACACGATTCGCCAAAGAATTGGCCCATTGCTGATGAAAATGCAGAAAAGATATGGAAAGAGTATTGATAGTGGTGGTGAGTTAACTGAAAAGGAAATTATCAGGGCTGAGAGGAACTCCGGGGTAATCAGCAATAGAGTGAGAGAAATTCAAATGCAAAATGCTTTGAGGAAAAGGGAACAGAAAGAACGCAGAGAAAGGGATTTGAGAGAAGGATTGCAACTATATAAGAATGGAAAATATGAGGAAGCACGAGAGAGATTTGAGTCTATTTTGGGATCAAAACCAGAACCTGAGGAAACAGCAGTTGCAAGTTACAACGTTGCTTGTTGTTACTCTAAGCTAAACCAGATTCAAGCTGCACTTTCTTCACTGGAAGAAGCACTGAATTCTGGTTTTGAAGACTTCAAGAGACTGAAAACTGATCCTGATCTGGCGAACGTCAGGAAGTCAGAGGAATTTGATCCTTTGTTGAAAAGATTTGATGAATCTTTCATCAATGAGAATGCCATCAATGCCATCAAATCTCTTTTTGGGTTTGGTAAGAAATAA 2028 0.4221 QNQVTKQRNDHDSKLPSNPAEVEDLRRDSAANPLIVFTYDELKIITANFRPDRVLGGGGFGSVYKGFISEELRQGLPTLAVAVKVHDGDNSHQGHREWLAEVIFLGQLSHPNLVKLVGYCCEDEHRVLIYEYMSRGSVEHNLFSKILLPMPWSIRMKIAFGAAKGLAFLHEAEKPVIYRDFKTSNILLDQDYNAKLSDFGLAKDGPVGDKSHVSTRVMGTYGYAAPEYIMTGHLTPRSDVYSFGVVLLELLTGRKSLDKLRPAREQNLAEWALPLLKEKKKFLNIIDPRLDGDYPIKAVHKAAMLAYHCLNRNPKARPLMRDIVDSLEPLQAHTEVSIGKTLTIISEVPESVTLPRTTQIHPTLFSSSTKFFSSRSPSYWGVSFCFSNTLLSRPLLFAVKASSGVGSEASKQESDRSEEEEEEPYEEYEVEIEQPFGLKFAKGRDGGTYIDAIAPGGSADKAGVFTVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRIGPLLMKMQKRYGKSIDSGGELTEKEIIRAERNSGVISNRVREIQMQNALRKREQKERRERDLREGLQLYKNGKYEEARERFESILGSKPEPEETAVASYNVACCYSKLNQIQAALSSLEEALNSGFEDFKRLKTDPDLANVRKSEEFDPLLKRFDESFINENAINAIKSLFGFGKK 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01587 675 Gene3D - 406 480 IPR036034 GO:0005515
Spst3g01587 675 SUPERFAMILY TPR-like 561 623 IPR011990 GO:0005515
Spst3g01587 675 ProSiteProfiles PDZ domain profile. 436 475 IPR001478 GO:0005515
Spst3g01587 675 PANTHER OS01G0588500 PROTEIN-RELATED 22 331 - -
Spst3g01587 675 MobiDBLite consensus disorder prediction 1 23 - -
Spst3g01587 675 Gene3D Transferase(Phosphotransferase) domain 1 133 345 - -
Spst3g01587 675 SUPERFAMILY Protein kinase-like (PK-like) 23 327 IPR011009 -
Spst3g01587 675 MobiDBLite consensus disorder prediction 407 427 - -
Spst3g01587 675 FunFam Probable serine/threonine-protein kinase PBL8 133 345 - -
Spst3g01587 675 SUPERFAMILY PDZ domain-like 416 473 IPR036034 GO:0005515
Spst3g01587 675 MobiDBLite consensus disorder prediction 7 23 - -
Spst3g01587 675 CDD STKc_IRAK 55 330 - -
Spst3g01587 675 ProSitePatterns Protein kinases ATP-binding region signature. 55 84 IPR017441 GO:0005524
Spst3g01587 675 Coils Coil 544 564 - -
Spst3g01587 675 FunFam Serine/threonine-protein kinase BIK1 16 132 - -
Spst3g01587 675 ProSitePatterns Serine/Threonine protein kinases active-site signature. 176 188 IPR008271 GO:0004672|GO:0006468
Spst3g01587 675 CDD PDZ 435 473 - -
Spst3g01587 675 Gene3D Tetratricopeptide repeat domain 561 650 IPR011990 GO:0005515
Spst3g01587 675 Pfam Protein tyrosine and serine/threonine kinase 52 327 IPR001245 GO:0004672|GO:0006468
Spst3g01587 675 ProSiteProfiles Protein kinase domain profile. 49 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst3g01587 675 Gene3D Phosphorylase Kinase; domain 1 12 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g01587 Spst-Chr3 19260065 19268127 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g01587 10 327 Glycoside Hydrolase AT3G07070 49.085 4.13e-101 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Spst3g01587 PK_Tyr_Ser-Thr 2.6e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01587 - - gmx:100808795 676.781