Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01576 ATGGAGATTCACTACAGTAGCAGCTACTTCGAAAGACGTCCCATTCTCAAGTCCAAGGCTCCCGCAGTTAAATGGGTCAAAGAATGGGTTCCACAAGATCTTGTAACGACTGGAGGGAAATGCATGCTCTTAAAATGGGTAACAGAGGATACCTTGAAGAACTTGAAAGAAAAGACAAAAGAGCCATCAATGCCTGAGCCAGAACCTGAGCCAACTACTGAAGTACTTTTTCTTTGCAGCTATGATGGATGTGGAAAGACATTCATAGATGCTGGTGCTTTGAGGAAGCATTCTCACATCCATGGAGAGAGGCAATATGTCTGTCACTATGAGGGATGTGGAAAGAAATTTCTGGATAGCTCAAAGTTGAAAAGACATTTTCTCATTCACACAGGGGAGAGGGATTTTGTGTGTCCTCATGAAGGCTGTGGGAAGGCCTTCTCCTTAGATTTCAACTTAAGGTCTCATATGAAAACACATTCCCAAGAGAACTATCATATCTGTCCATACTCAGAATGTGGAAAGAGATACGCTCACGAATACAAGCTAAAGAATCACATCGCATCTCATCATGAAAAGAATGCATCTGTGGATGTGACAAAGTACACTACTCCACCTTCAGAGAAGCAAACAAAAGCTGCTAAACCTTCTGGAGGGGCATATGGTTCTGCATCATCTGACCGTCCCTATGCATGTCCCTATGACGGGTGTGAAAAGGCGTACATCCATGAATACAAGCTTAGACTCCATTTGAAGAGGGAGCACCCGGGGCTTATGCCCGATGAAAATGCTGAGCAAGCTCAGGCTAATAATGTTGACAATGAAATGGATGAAGCAAGTGACCAAGATGCCTATATCGCGAAACGGTCAAATGGTAAAAGTCAGAAGCAGAGTAGGGCTAAACCAAATCTTAAATTGCCTCCTTCGAAAATTGCAAAACGCAAAGTGTTGTCCGCGCCCACTATAACTGTAAATAAAAATTCTTGGCCCGTGAAAGATGAACCTTTTGATGAAGAAGATAGTGAAGAAACAGAAGAGGATCGTGACAATGTTGAAGATGGTTGGAGATATACTGGAGGAAACAACGAAGATGACGATGAAGAAACAGAATATGAAGACTGA 1122 0.4269 MEIHYSSSYFERRPILKSKAPAVKWVKEWVPQDLVTTGGKCMLLKWVTEDTLKNLKEKTKEPSMPEPEPEPTTEVLFLCSYDGCGKTFIDAGALRKHSHIHGERQYVCHYEGCGKKFLDSSKLKRHFLIHTGERDFVCPHEGCGKAFSLDFNLRSHMKTHSQENYHICPYSECGKRYAHEYKLKNHIASHHEKNASVDVTKYTTPPSEKQTKAAKPSGGAYGSASSDRPYACPYDGCEKAYIHEYKLRLHLKREHPGLMPDENAEQAQANNVDNEMDEASDQDAYIAKRSNGKSQKQSRAKPNLKLPPSKIAKRKVLSAPTITVNKNSWPVKDEPFDEEDSEETEEDRDNVEDGWRYTGGNNEDDDEETEYED 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01576 373 Gene3D Classic Zinc Finger 103 133 - -
Spst3g01576 373 Gene3D Classic Zinc Finger 163 195 - -
Spst3g01576 373 SMART c2h2final6 136 160 IPR013087 -
Spst3g01576 373 SMART c2h2final6 166 190 IPR013087 -
Spst3g01576 373 SMART c2h2final6 77 101 IPR013087 -
Spst3g01576 373 SMART c2h2final6 230 255 IPR013087 -
Spst3g01576 373 SMART c2h2final6 106 130 IPR013087 -
Spst3g01576 373 MobiDBLite consensus disorder prediction 192 227 - -
Spst3g01576 373 SUPERFAMILY beta-beta-alpha zinc fingers 225 253 IPR036236 -
Spst3g01576 373 SUPERFAMILY beta-beta-alpha zinc fingers 80 130 IPR036236 -
Spst3g01576 373 ProSiteProfiles Zinc finger C2H2 type domain profile. 106 135 IPR013087 -
Spst3g01576 373 ProSiteProfiles Zinc finger C2H2 type domain profile. 136 165 IPR013087 -
Spst3g01576 373 ProSitePatterns Zinc finger C2H2 type domain signature. 79 101 IPR013087 -
Spst3g01576 373 SUPERFAMILY beta-beta-alpha zinc fingers 117 169 IPR036236 -
Spst3g01576 373 ProSitePatterns Zinc finger C2H2 type domain signature. 232 255 IPR013087 -
Spst3g01576 373 Gene3D Classic Zinc Finger 77 102 - -
Spst3g01576 373 Gene3D Classic Zinc Finger 134 161 - -
Spst3g01576 373 FunFam Zinc finger protein 410 134 161 - -
Spst3g01576 373 MobiDBLite consensus disorder prediction 288 302 - -
Spst3g01576 373 FunFam Putative zinc finger protein 143 103 133 - -
Spst3g01576 373 ProSitePatterns Zinc finger C2H2 type domain signature. 108 130 IPR013087 -
Spst3g01576 373 Coils Coil 262 282 - -
Spst3g01576 373 ProSiteProfiles Zinc finger C2H2 type domain profile. 230 260 IPR013087 -
Spst3g01576 373 MobiDBLite consensus disorder prediction 335 349 - -
Spst3g01576 373 Pfam Zinc finger, C2H2 type 136 160 IPR013087 -
Spst3g01576 373 ProSitePatterns Zinc finger C2H2 type domain signature. 168 191 IPR013087 -
Spst3g01576 373 PANTHER TRANSCRIPTIONAL REPRESSOR PROTEIN YY 18 346 - -
Spst3g01576 373 MobiDBLite consensus disorder prediction 288 373 - -
Spst3g01576 373 FunFam zinc finger transcription factor YY1 77 102 - -
Spst3g01576 373 FunFam Zinc finger transcription factor YY1 205 273 - -
Spst3g01576 373 Gene3D Classic Zinc Finger 201 273 - -
Spst3g01576 373 FunFam zinc finger transcription factor YY1 163 194 - -
Spst3g01576 373 ProSiteProfiles Zinc finger C2H2 type domain profile. 77 106 IPR013087 -
Spst3g01576 373 ProSitePatterns Zinc finger C2H2 type domain signature. 138 160 IPR013087 -
Spst3g01576 373 ProSiteProfiles Zinc finger C2H2 type domain profile. 166 195 IPR013087 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g01576 10 357 C2H2 Transcription Factor Family AT4G06634 66.301 4.76e-148 422
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Spst3g01576 zf-C2H2 0.00037 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01576 - - gmx:100811480 662.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g01576 3 19086782 19090705 Spst3g01576 3 19086782 19090705 ECH