Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01564 ATGAACATGGAGTCCATTATTATGATTTTGATCTTTTTGGTAGCATCAGATCCAGGCTTAGCAGCACCCTCTCCCTCTCCTTCTCCCACCATTTCCCCCACTGACAATTCAACATGCCCAGTGCCCATGAATTATGTTCAAACAGTTCCTTGGAACATCTCTTCTTGCCATAACTTCCAACCCTTGCCATCCCAATACCAAACAAGCACAAGTCCTTGCTGCCAAACCCTCCTATCCCTCTTTGGCGTAGCACTTGCACAAAACCTCAAAGAAAACTCTCTTTTCCAACTCCCCAACCTCCCTACCTCTATCTCTTGCCTCCAACACTTCCAATCTAATCTCACATCCCTCTCACTTCCCAACAACCTTGTCTCCTCCTGCTTTGATCCACATCAATTTGTCATCACTCCCAACATCTGTGCTCGTATGCAGAACATGGAAGATTGGCTCACCAGGCTTGGTTCTACACCACAGCTCGACACTGCATGTAAACCAGACCTCACTGATCGAAACCAATGCAACAAGTGCGTGGCTGAGGGGTACAAGGTTCAGCAGAAGCTTAGTGCCATTGATGGTAATGAATCACATTCCCAAGATTGCTTTTACTTCACAGCACTTTACATGGCTGGAGTTGCCAATGAGTATGGCCCTGAGAGCAAAGGTGCTTTGTCTTGCATTTTGATTTTGTTGGTTAATTCACAAGTTGATTCAAGGGGTAGCCGTCGTGCTCTTGTGCTTGGTTTGATTGTAGCTTCACTTTCAGTCCTGGTAATCATACTGTTAGGATTAGGTTTCTATTTTTGGTACACCAAGAGAAGAAGTGTCGAAAATTTGCTAGCCTATTCTGATCTACAGGAACAAAGCTTCAGCCTAAGGCTGAGACCAAATACAGTGCTAACTTGGTTTGAATTTGAGGATCTTGTGAGGGCCACCAACAATTTTTCAACGCAGAACTTTATTGGCAGAGGTGGGTTTGGGTTGGTTTACAAGGGCATTCTACCTGATGGCACAATGGTTGCGGTGAAAAGGCTTGAAGAATCCGATTCTCAAGGAGATGCTTTGTTCTACAGTGAGGTGGAGATTGTTAGCAACTTGAAGCACCGTAATCTGGTGCCACTAAGAGGGTGTTGTGTGGTTGATGAGGAGGATGAGAATCACAATCTTGAATACAGAAGAAGGTTTCTAGTTCATGAATATATGCCAAACGGAAGCCTTGCAGACCATCTTTTTCCAACCAAATTAGATAATGAAAATACAACGAAATCCCTGACTTGGCCTCAAAGAAAAAACATAGTCTTGGATGTGGCAAATGCTTTGGTTTATTTGCACTTTGGTGTTAAACCTGCAGTGTATCACAGAGATATCAAAGCCACCAATATACTACTTGATGCAGATATGAGGGCGAAGGTTGGAGATTTTGGGCTAGCCAAATGGAACAGTGAAAGTAGGTCTCATCTAAATACAAGAGTAGCTGGAACTCGTGGATATGTAGCACCTGAATATGCACTCTATGGTCAGCTAACTGAGAAGAGTGATGTCTACAGCTTTGGAGTGGTTGTTCTTGAGATAATTTGTGGAAGAAAAGCCCTTGAGTTTTCTTCATCAGGGACACCGGTTTTCTTGATTACTGATTGGGTTTGGTCATTGATGAAATCTGGGAAGATAGGAGAGGCTTTGGATCCTTCTATGTTAGGAGATGGAAATTCTGCTAGAAACATAATGGAGAGGTTTTTGCTGGTTGGAATTCTTTCTTCTCATGTAATGGTTGCTTCAAGGCCAACAATTTTGAATGTTTTGAAGATGTTAGAAGGGGATATTGAGGTTCCATCAATTCCAGATAGGCCACTGACTCATGGGCACTATGTGTTGTATAATGGTGATTGCTCTGGGATAAGCTCAGGATGTGGTTTTGTGAGCTCATGA 1923 0.4316 MNMESIIMILIFLVASDPGLAAPSPSPSPTISPTDNSTCPVPMNYVQTVPWNISSCHNFQPLPSQYQTSTSPCCQTLLSLFGVALAQNLKENSLFQLPNLPTSISCLQHFQSNLTSLSLPNNLVSSCFDPHQFVITPNICARMQNMEDWLTRLGSTPQLDTACKPDLTDRNQCNKCVAEGYKVQQKLSAIDGNESHSQDCFYFTALYMAGVANEYGPESKGALSCILILLVNSQVDSRGSRRALVLGLIVASLSVLVIILLGLGFYFWYTKRRSVENLLAYSDLQEQSFSLRLRPNTVLTWFEFEDLVRATNNFSTQNFIGRGGFGLVYKGILPDGTMVAVKRLEESDSQGDALFYSEVEIVSNLKHRNLVPLRGCCVVDEEDENHNLEYRRRFLVHEYMPNGSLADHLFPTKLDNENTTKSLTWPQRKNIVLDVANALVYLHFGVKPAVYHRDIKATNILLDADMRAKVGDFGLAKWNSESRSHLNTRVAGTRGYVAPEYALYGQLTEKSDVYSFGVVVLEIICGRKALEFSSSGTPVFLITDWVWSLMKSGKIGEALDPSMLGDGNSARNIMERFLLVGILSSHVMVASRPTILNVLKMLEGDIEVPSIPDRPLTHGHYVLYNGDCSGISSGCGFVSS 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01564 640 SMART serkin_6 314 602 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst3g01564 640 ProSiteProfiles Protein kinase domain profile. 314 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst3g01564 640 ProSitePatterns Protein kinases ATP-binding region signature. 320 342 IPR017441 GO:0005524
Spst3g01564 640 Pfam Protein kinase domain 316 531 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst3g01564 640 Pfam SPARK 35 201 IPR043891 -
Spst3g01564 640 SUPERFAMILY Protein kinase-like (PK-like) 292 603 IPR011009 -
Spst3g01564 640 ProSitePatterns Serine/Threonine protein kinases active-site signature. 450 462 IPR008271 GO:0004672|GO:0006468
Spst3g01564 640 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 52 618 - -
Spst3g01564 640 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 400 610 - -
Spst3g01564 640 CDD STKc_IRAK 320 604 - -
Spst3g01564 640 Gene3D Phosphorylase Kinase; domain 1 277 399 - -
Spst3g01564 640 Gene3D Transferase(Phosphotransferase) domain 1 400 609 - -
Spst3g01564 640 FunFam Receptor-like serine/threonine-protein kinase At4g25390 279 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g01564 Spst-Chr3 18992222 18994144 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g01564 31 620 Receptor kinase-like Gene Family AT1G11050 55.276 0.0 644
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Spst3g01564 Pkinase 5.5e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01564 - - vra:106765729 1072.77