Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01539 ATGAAAATCAAAAACAAGCCAAAGAAGCTAAGTATGACTTTGTCCTCTCAATTACTTGTTCATTTTATCTTACTCATCCTCCTCCAGCTTCCGTTACACTACCTTTTGGTTGGTGTATCATCAGCCCCTTTAAGCATCACCACAGACACAGAAGCCTTGATCTCATTCAAGTCTCAACTGACAAAAGACACTCTTAATCCCCTATATTCTTGGAACCATAATTCATCCCCTTGCAATTGGACTGGTGTCCAATGTGACAGGCTTGGCCAAAGAGTTACAGGCTTGGATCTTTCAGGCTTGAAACTATCAGGTCACTTAAGTCCTTATATTGGTAATCTCTCCTCTCTCAAGTCACTCCATTTGCAGAATAACCAACTTAGAGGAGTGATTCCTGACCAAATTGGCAACCTATTCAGTTTGAGAGTCCTAAATATGAGCTCTAACATGTTAGAAGGAAAGCTTCCTTCAAACTTCACCCACTTGAATGAGCTCCAGATTCTTGATTTATCGTCAAACAAGATTGTAAGCAAGATTCCTGAAGATATCAGCAGCTTAAAAAGGCTTGAGGTTTTGAAACTGGGAAGGAATAGCCTCTATGGTGAAATCCCAGCATCTCTGGGAAATATTTCTTCTCTCAAAAATATCAGTTTTGGCACCAACTTTCTCACTGGCTGGATTCCCAGTGACTTGGCTAGGTTGCATGTTTTGGTTGAGCTTGATCTCACTCTTAACAATCTCAATGGGGTTGTTCCACCTGTTATATACAACTTGTCTTCCCTTGTTAAATTTGCCTTACCTTCAAACTCTTTGTGGGGTGAGATTCCTCAGGATATTGGTCACAAGCTTCCAAAACTTACAGAGTTCAATATCTGCTTCAATTATTTCACAGGTGGAATTCCAGGGTCTTTGCACAACCTCACCAACATTAGGGTCATTGGCATGGCTTCCAACTTTTTGGAAGGAACCGTGCCACCTGGTTTGGGAAATCTCCCATTTCTTCGCTTGTTTAATATTGGTTATAATTCGTTAGTGAGTTCAGGTGTCAGAGGTTTAGACTTCATTACTTCCTTGACAAACAGTACTCACCTCAACTTTCTGTCAATTGGTGGAAACATGTTGGAAGGTGTGATTCCAGAAACCATTGGCAATCTCTCCAAGGATCTGTCAACATTTTACATGGGACAGAATCGTTTAAATGGAAGCATACCCCCCTCCATTGGTCGTCTTAGTGGCTTGCAGTTGTTAAACTTAAGCTACAATAAATTCTCTGGAGAAATCCCACATGAGTTAGGCCAGTTAGCGGAACTACAAGAACTATCTCTGGCTGGAAATGAGATATCAGGGGTTATTCCAGATTCCCTAGGTAATCTCCTCATGTTAAACCTGATTGACTTGTCAGGAAACAGGCTTGTGGGGAGGATACGGACCAGTTTTGGGAATTTTCGAAGACTGCTTTACATGGACTTATCAAGCAACCAACTCAATGGAAGCATTCCTATGGAAATCCTCAATCTCCCAAGTTTGAGCAATGTTTTGAACTTGTCAATGAACTATTTGAGTGGATCAATACCTCAAATTGGGAGATTGAGTGGTGTTGCCTCCATTGACTTTTCTAGCAACCAATTGTATGGTGGCATCCCCAGCTCATTCGGCAATTGTCTCAGCTTGGAAATTTTGTTTTTGACCAGGAATCAGCTTTCAGGTTCCATTCCAAAGGCTCTTGGAGAACTGAGAGGCTTGGAAACTTTGGACCTATCCTCCAACCAACTCTCTGGAACCATTCCTGTTGAACTTCAAAATTTACAGGCGCTTAAGCTCTTAAACCTCGCGTACAATGATTTAGAAGGAGCCATTCCTAGTGGTGGAGTTTTCCAAAATCTCTCTGCTGTCCGTCTAGAAGGCAATGAAAACCTCTGCTTGCAAATCCCATGTGTGAATCGTGGCCAAGGAAGAAAAAATGTAAGACATTATATCATCATAGCCATTATAGTAGCATTAGTACTGTGTCTCACAATTGGCTCACTACTATATATAAAGAGCAGAAAGGTAAAGGTAGCAGCAGCAGCATCTGAACAGATAAAACCTCTTGCACCAATGATCTCTTATGATGAGCTTCGTTTGGCAACTGAGGAGTTCAACCAGGAAAACTTATTAGGAGTTGGGAGTTTTGGGTCAGTTTACAAAGGCAATCTAAGTCATGGAACTACTGTTGCAGTGAAAGTTCTTGAGACCCTAAGAACTGACTCTTTAAAGAGTTTCTTTGCAGAATGCGAGGCTATGAAGAACATAAGGCATCGAAATCTGGTCAAGCTCATCACATCATGCTCTAGTGTTGACTTCAAAAACAATGACTTTCGAGCACTGGTGTATGAGTATCTGTGTAATGGTAACTTGGAAGATTGGATTAAGGGGAGGAGAAAACATGCAAACGGAAATGGGTTGAACCTTATGGAGAGACTGAATATAGCAATAGATGTTGCATGTGCATTGGATTACCTGCACAATGACATTGAAATCCCAGTTGTGCACTGTGATTTGAAGCCTAGCAACATTCTACTGGACGCAGACATGACAGCAAAGGTTGGAGACTTTGGATTGGCTAGGTTGCTTATTCAGAGATCAACTAACGAAGCTTCCATTAGCTTCACTCATCTCCTTAGGGGCTCTATTGGTTACATACCTCCAGAATATGGATGGGGAGAGAAAGCATGTGCAGCTGGAGATGTATATAGTTTTGGTATAGTGTTAATGGAGCTCTTATCTGGGAAAAGCCCTACAGATGAGTGTTTTACAGGAGGCCTAAGCATAAGAAGATGGATGCATTCAGCATTGAAAGACAAGACAGTGGAAGCCATTGACCCTCAGTTGGTGTCCCTAATTTTGCATGATGACCCTTCAGAAGGACCAAATAACCTACAAGTGTGTTGTGTGGATGCAATAATAGGAGTAGCCATATCTTGCACTGCAGATAACCCAGATGAACGCATTGACATTAGAGATGCTGTTCAGAAACTGAGAAAGCTTCAAGAGACATTCTTTCGAATCACTCCAATGAGAGCCACATTACACCTATCGGAGATACCAAGTCTTATTTCCTTGTTTCAGTAA 3108 0.4154 MKIKNKPKKLSMTLSSQLLVHFILLILLQLPLHYLLVGVSSAPLSITTDTEALISFKSQLTKDTLNPLYSWNHNSSPCNWTGVQCDRLGQRVTGLDLSGLKLSGHLSPYIGNLSSLKSLHLQNNQLRGVIPDQIGNLFSLRVLNMSSNMLEGKLPSNFTHLNELQILDLSSNKIVSKIPEDISSLKRLEVLKLGRNSLYGEIPASLGNISSLKNISFGTNFLTGWIPSDLARLHVLVELDLTLNNLNGVVPPVIYNLSSLVKFALPSNSLWGEIPQDIGHKLPKLTEFNICFNYFTGGIPGSLHNLTNIRVIGMASNFLEGTVPPGLGNLPFLRLFNIGYNSLVSSGVRGLDFITSLTNSTHLNFLSIGGNMLEGVIPETIGNLSKDLSTFYMGQNRLNGSIPPSIGRLSGLQLLNLSYNKFSGEIPHELGQLAELQELSLAGNEISGVIPDSLGNLLMLNLIDLSGNRLVGRIRTSFGNFRRLLYMDLSSNQLNGSIPMEILNLPSLSNVLNLSMNYLSGSIPQIGRLSGVASIDFSSNQLYGGIPSSFGNCLSLEILFLTRNQLSGSIPKALGELRGLETLDLSSNQLSGTIPVELQNLQALKLLNLAYNDLEGAIPSGGVFQNLSAVRLEGNENLCLQIPCVNRGQGRKNVRHYIIIAIIVALVLCLTIGSLLYIKSRKVKVAAAASEQIKPLAPMISYDELRLATEEFNQENLLGVGSFGSVYKGNLSHGTTVAVKVLETLRTDSLKSFFAECEAMKNIRHRNLVKLITSCSSVDFKNNDFRALVYEYLCNGNLEDWIKGRRKHANGNGLNLMERLNIAIDVACALDYLHNDIEIPVVHCDLKPSNILLDADMTAKVGDFGLARLLIQRSTNEASISFTHLLRGSIGYIPPEYGWGEKACAAGDVYSFGIVLMELLSGKSPTDECFTGGLSIRRWMHSALKDKTVEAIDPQLVSLILHDDPSEGPNNLQVCCVDAIIGVAISCTADNPDERIDIRDAVQKLRKLQETFFRITPMRATLHLSEIPSLISLFQ 1035
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01539 1035 Gene3D Transferase(Phosphotransferase) domain 1 793 1016 - -
Spst3g01539 1035 ProSitePatterns Protein kinases ATP-binding region signature. 718 740 IPR017441 GO:0005524
Spst3g01539 1035 ProSiteProfiles Protein kinase domain profile. 712 1013 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst3g01539 1035 Gene3D Ribonuclease Inhibitor 106 350 IPR032675 -
Spst3g01539 1035 Gene3D Ribonuclease Inhibitor 45 105 IPR032675 -
Spst3g01539 1035 Gene3D Ribonuclease Inhibitor 351 646 IPR032675 -
Spst3g01539 1035 FunFam Putative leucine-rich repeat receptor-like protein kinase family protein 243 350 - -
Spst3g01539 1035 SUPERFAMILY L domain-like 388 639 - -
Spst3g01539 1035 ProSiteProfiles Leucine-rich repeat profile. 579 602 IPR001611 GO:0005515
Spst3g01539 1035 CDD STKc_IRAK 718 1008 - -
Spst3g01539 1035 SMART LRR_typ_2 161 185 IPR003591 -
Spst3g01539 1035 SMART LRR_typ_2 409 432 IPR003591 -
Spst3g01539 1035 SMART LRR_typ_2 601 626 IPR003591 -
Spst3g01539 1035 SMART LRR_typ_2 113 136 IPR003591 -
Spst3g01539 1035 SMART LRR_typ_2 433 456 IPR003591 -
Spst3g01539 1035 SMART LRR_typ_2 233 257 IPR003591 -
Spst3g01539 1035 SMART LRR_typ_2 137 160 IPR003591 -
Spst3g01539 1035 SMART LRR_typ_2 577 600 IPR003591 -
Spst3g01539 1035 ProSitePatterns Serine/Threonine protein kinases active-site signature. 841 853 IPR008271 GO:0004672|GO:0006468
Spst3g01539 1035 FunFam Receptor protein kinase CLAVATA1 45 203 - -
Spst3g01539 1035 ProSiteProfiles Leucine-rich repeat profile. 163 185 IPR001611 GO:0005515
Spst3g01539 1035 SUPERFAMILY L domain-like 69 385 - -
Spst3g01539 1035 Pfam Leucine rich repeat 155 198 IPR001611 GO:0005515
Spst3g01539 1035 Pfam Leucine rich repeat 555 614 IPR001611 GO:0005515
Spst3g01539 1035 FunFam Inactive leucine-rich repeat receptor-like protein kinase 355 646 - -
Spst3g01539 1035 FunFam LRR receptor-like serine/threonine-protein kinase EFR 683 792 - -
Spst3g01539 1035 Gene3D Phosphorylase Kinase; domain 1 693 792 - -
Spst3g01539 1035 PANTHER LEUCINE RICH REPEAT KINASE 2 358 1011 - -
Spst3g01539 1035 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 793 1017 - -
Spst3g01539 1035 Pfam Protein kinase domain 713 1001 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst3g01539 1035 PRINTS Leucine-rich repeat signature 577 590 - -
Spst3g01539 1035 PRINTS Leucine-rich repeat signature 484 497 - -
Spst3g01539 1035 Pfam Leucine rich repeat N-terminal domain 48 86 IPR013210 -
Spst3g01539 1035 SUPERFAMILY Protein kinase-like (PK-like) 695 1005 IPR011009 -
Spst3g01539 1035 SMART serkin_6 712 1013 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst3g01539 1035 SMART LRR_sd22_2 185 217 - -
Spst3g01539 1035 SMART LRR_sd22_2 233 259 - -
Spst3g01539 1035 SMART LRR_sd22_2 360 386 - -
Spst3g01539 1035 SMART LRR_sd22_2 161 184 - -
Spst3g01539 1035 SMART LRR_sd22_2 577 603 - -
Spst3g01539 1035 SMART LRR_sd22_2 433 454 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g01539 Spst-Chr3 18815937 18819134 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g01539 19 1013 Receptor kinase-like Gene Family AT5G20480 41.569 0.0 708
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Spst3g01539 Pkinase 1.3e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01539 - - gmx:102664710 1602.03