Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01536 ATGATACTAAATGTATCATTAGAAGCAGAGGACAAAAGTTGGAAACGCGATTTTGCTGTGGAATTTGGAGAAGCAGAAAAGCCAACGTGTAAAGCAACCAGACTCGCAACAAAACGTGCTATTCATTCTCAGGGATTTTCTTGGTTAATTCCTTTGTACGCAACTGCTGTGTTTCCCTGCAGAACGTGGAAACAACTTTTGGGGAAGGATTTTGCTGGCATTGAGTTCGATGGCCCTAATGGTATGATTGCTGTTCTGGCTTTGCCAGAAACTCCAGAATTTCCACATGATTTCTTGCAGGATAATCTTCTTAAGGATAAGCCAGAAATGGAAATCAAACTTGAGTCTTCTGACAGCCCGCAGCATAAAAAGATATCAGCCAGATGGGATCCAGCTCAAGCATGTCGGCCTATAATTGATGAAGCACCTGTGTTCTATCCAAGTATTGAGGAATTTGAAGACACACTTGGTTACATAGCTAAGATTCGGCCCCATGCTGAACCTTATGGCATATGTAGGATTGTCCCTCCAGCTTGCTGGGTACCACCATGTCCTCTTAAGGAGAAAGATTTGTGGGAAAATGCAAAGTTTCCGACTCGTATCCAGCAAATTGATTTGCTTCAGAACAGGGAGCCCATGAGAAAGAAAATCAGGGGAAGGAGGCGAAAACGTAGAAAGCTATCAAAGATGGGCATGGGTAGGAGAACTGCCAAATCAGGTTCTGAAGCTAACGTTGGTTCTGAGCCTGACGAGAAGTTTGGATTCCAATCAGGGTCAGATTTCACACTTGAAGACTTTCAGCAATATGCTAAGGTTTTTAAAGATTGCTACTTTGGGTTGAATTATGCCAATGAATATGGAAAAGTTAGCAATTATAGTCACCAGCAGAGATGGGAGCCCTCTGTGGAGGACATTGAAGGTGAATACTGGCGAATAATAGAGCAACCAACTGATGAGGTTGAGGTGTATTATGGAGCTGACTTGGAAACTGGGTCACTTGGAAGTGGTTTTCCTAAGACTTCATCCTTCACTAAGAATTATTCAGATAAATATGCCGTGTCTGGCTGGAATCTGAATAACTTTCCGCGACTTCCAGGTTCTGCATTATGTTTTGAAGGAAGTGATATCTCAGGAGTTCTAGTTCCATGGCTGTATGTTGGAATGTGCTTTTCCTCATTTTGCTGGCATGTTGAGGACCATCACCTCTATTCACTTAATTATCTGCATTGGGGTGACCCAAAAGTATGGTATGGAGTACCTGGAACCCATGCTCCAGGTTTGGAAGATGCAATGAGAAAGCACTTGCCTGATTTATTTGAAGAACAACCAAATCTACTAAATGAATTGGGTCAAGTTCAACCTGGTGGATTAAATAGGGAATGGTCAGCGTCTAATGTTGGATGTTATATGTCAAAAAAACCTTTGCTAATATATCAAGCTTTTGGTATGATGAACATGGTTTTGGAGTTGGGTTATGATTCTAGTGGTTATGATTTCTTCTTTGAGCAGGTGACTCAGTTATCTCCTTCAATTCTTAAATCTGAGGGGGTGCCTGTGTATCGCACTGTTCAGAATTCAGGGGAATTTGTTGTTACGTTTCCAAGGGCATACCACTGTGGCTTCAATTGTGGCTTCAACTGCGCAGAGGCTGTGAATGTGGCTCCTGTTGATTGGCTTGTGCATGGCCAGAATGCTGCCGAGCTTTACAGTTTGCAGTGCCGTAAGACTTCATTGTCTCATGACAAGTTATTATTTGGATGTGCTCAGGAAGCCGTGTGTGCCCTTGCAGAGCTAACTCTTCATGGAAAAGAAACTCTAAAATATACAAAATGGAGTAGCGCTTGTGGGAAAGATGGAGTTCTTACCAAGGCAGTTAAGACAAGGATAACTATGGAAAAGGAGAGGCTTTACGGTCTTCCCACTCATTTAAAAATGCTGCAGATGGACACTGATTTTGATTTGTTAGAGGAAAGAGAATGCTTCTCTTGCTTCTATGACTTGCACCTATCTGCCGTAGGTTGCAAGTGCTCCCCCGATAGTTATTCTTGTCTCAAACACTCACATTTGTTTTGCTCATGTGAAATGGGCGAAAGGTTTGTTCTGTTTCGTTATACCATGAATGAACTAAGTACATTGGTTGAGGCGTTAGAAGGAGAAGCACATGCTATTGAAGTGTGGGCGAATGGAGGTAAAAGATCAACATATTGGGCAGGAACCAATGATAAGTCAAACTCAAATATACCTAGCATTTCTGTAGAATTAGGCCACTCACAGTTTCACCATGAAACTTATAGTGCACCATATGGCGCTAAAAATTGTGGCAAAGATAATGTGAATGAAAAAAGTTTGGTCTTCTATAATGAAGATAAGATGAAGGGAGGTTCTCTGGATTTGAATATTGATGTTATGTGTGTGGAACCTGAAAACTATTTTCTGCATGCTGCTGAATTTCATCATAACAATAAGGGTGATCCATATGTTGGAAAAGTCTGCAATTCAGAGGCCAGAAAGGAACATGACTACATGAAACCTGGGGCCACATGTATTGCTGCCTTGGAGAAAGAATTTTCTTCATGTTCAAGGGACGTTCATAATTCTTGTATATTTGATGGCTATAAATTGTTTGGGGTGGATCTGCAGATGCATTCTGATTCGGGAGAACAACTCAACAGTGTATTTAAAATGGGTGATATTGAAACGTGCAATACAAGAATATCTTTGAAAAACCAAAACTTCTTAACGCAGAAGATTGGTGTTTTTGTAGAGCCTGTGAATTTGGGCTCTGTTATGCATGGTAAGCTGTGGTGCAGTAAGCATGCGATATATCCAAAAGGATTCAAGAGTCGTGTTAAGTTCTTTAGCATTCTTGATCCAGCAAGAATTTGTAACTATGTTTCTGAAGTCTATGATGCCGGATTTCTTGGGCCGCTTTTCAAGGTTACCATGGAAGAACATCCAAATGAGGTCTTCACAAGCACCTCAGCAGATAAGTGTTGGGAGTCAGTTCTTGACAGACTAAATCATGAAACGAAGAAGCTAAGGAATCAAGGGGAAAGAGAACTTCCTCCCTTGGAGCTTCTCCAAAGCATTAAAGGTCATAAAATGTTTGGATTCCTTTCACCATCCATTAGTCAGGCTATTGAAGCTCTGGATCCCAACCATCAATGCGTCGAGTACTGGAATCACAAAGAAGTTGCGTCTGAATCTTCAGACAGTGCCATTGATGACTGTAAGCTCAGTCATGGTTCAAGTAACTCTCTATGTGATGTCAAGACCAAACTCCTTGGCCCTGGTTTGACAAAGCAGGAGCAAGATAGCAGCAGAGGAAATTGTGATTCTTTTGAAGAGATGAAATTGGTGCTACAAGGATTGTTGAAAAAGGCAAGTGCTGAAGAATTGAGTTCCATGCACAAGTTATTCAGCTCTGATGCACAGTTCAGTAAGTGGAGAGTGGCATTTGTAACTCTGATAGAGGAAATCCAGAAAGCTTGTGCATAA 3498 0.4145 MILNVSLEAEDKSWKRDFAVEFGEAEKPTCKATRLATKRAIHSQGFSWLIPLYATAVFPCRTWKQLLGKDFAGIEFDGPNGMIAVLALPETPEFPHDFLQDNLLKDKPEMEIKLESSDSPQHKKISARWDPAQACRPIIDEAPVFYPSIEEFEDTLGYIAKIRPHAEPYGICRIVPPACWVPPCPLKEKDLWENAKFPTRIQQIDLLQNREPMRKKIRGRRRKRRKLSKMGMGRRTAKSGSEANVGSEPDEKFGFQSGSDFTLEDFQQYAKVFKDCYFGLNYANEYGKVSNYSHQQRWEPSVEDIEGEYWRIIEQPTDEVEVYYGADLETGSLGSGFPKTSSFTKNYSDKYAVSGWNLNNFPRLPGSALCFEGSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKVWYGVPGTHAPGLEDAMRKHLPDLFEEQPNLLNELGQVQPGGLNREWSASNVGCYMSKKPLLIYQAFGMMNMVLELGYDSSGYDFFFEQVTQLSPSILKSEGVPVYRTVQNSGEFVVTFPRAYHCGFNCGFNCAEAVNVAPVDWLVHGQNAAELYSLQCRKTSLSHDKLLFGCAQEAVCALAELTLHGKETLKYTKWSSACGKDGVLTKAVKTRITMEKERLYGLPTHLKMLQMDTDFDLLEERECFSCFYDLHLSAVGCKCSPDSYSCLKHSHLFCSCEMGERFVLFRYTMNELSTLVEALEGEAHAIEVWANGGKRSTYWAGTNDKSNSNIPSISVELGHSQFHHETYSAPYGAKNCGKDNVNEKSLVFYNEDKMKGGSLDLNIDVMCVEPENYFLHAAEFHHNNKGDPYVGKVCNSEARKEHDYMKPGATCIAALEKEFSSCSRDVHNSCIFDGYKLFGVDLQMHSDSGEQLNSVFKMGDIETCNTRISLKNQNFLTQKIGVFVEPVNLGSVMHGKLWCSKHAIYPKGFKSRVKFFSILDPARICNYVSEVYDAGFLGPLFKVTMEEHPNEVFTSTSADKCWESVLDRLNHETKKLRNQGERELPPLELLQSIKGHKMFGFLSPSISQAIEALDPNHQCVEYWNHKEVASESSDSAIDDCKLSHGSSNSLCDVKTKLLGPGLTKQEQDSSRGNCDSFEEMKLVLQGLLKKASAEELSSMHKLFSSDAQFSKWRVAFVTLIEEIQKACA 1165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01536 1165 Pfam JmjC domain, hydroxylase 498 553 IPR003347 -
Spst3g01536 1165 Pfam JmjC domain, hydroxylase 383 448 IPR003347 -
Spst3g01536 1165 Gene3D - 920 1057 - -
Spst3g01536 1165 Pfam F/Y-rich N-terminus 924 968 IPR003888 GO:0005634
Spst3g01536 1165 PANTHER LYSINE-SPECIFIC DEMETHYLASE 137 1008 - -
Spst3g01536 1165 FunFam Putative lysine-specific demethylase JMJ16 919 1057 - -
Spst3g01536 1165 ProSiteProfiles JmjC domain profile. 350 570 IPR003347 -
Spst3g01536 1165 ProSiteProfiles FYR domain FYRC motif profile. 973 1063 IPR003889 GO:0005634
Spst3g01536 1165 Pfam C5HC2 zinc finger 660 712 IPR004198 -
Spst3g01536 1165 SUPERFAMILY Clavaminate synthase-like 322 591 - -
Spst3g01536 1165 Gene3D Cupin 127 554 - -
Spst3g01536 1165 MobiDBLite consensus disorder prediction 217 251 - -
Spst3g01536 1165 ProSiteProfiles FYR domain FYRN motif profile. 913 971 IPR003888 GO:0005634
Spst3g01536 1165 SMART JmjN_1 141 182 IPR003349 -
Spst3g01536 1165 Pfam jmjN domain 143 176 IPR003349 -
Spst3g01536 1165 SMART cupin_9 350 570 IPR003347 -
Spst3g01536 1165 SMART fyrc_3 977 1071 IPR003889 GO:0005634
Spst3g01536 1165 MobiDBLite consensus disorder prediction 217 232 - -
Spst3g01536 1165 ProSiteProfiles JmjN domain profile. 142 183 IPR003349 -
Spst3g01536 1165 SMART fyrn_3 927 971 IPR003888 GO:0005634
Spst3g01536 1165 Pfam F/Y rich C-terminus 975 1062 IPR003889 GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g01536 Spst-Chr3 18763116 18772340 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g01536 90 802 JUMONJI Transcription Factor Family AT1G30810 53.463 0.0 695
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Spst3g01536 FYRC 1.2e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01536 K11446 - gmx:100784581 1687.16