Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01534 ATGACGAGGAAATATTGGAGGGTCGAGGGACACAGTTCGAACGTCTTGATTCTTGGTGATGAATATATGCAGAGCCAACTTGTGTGCAATGGTTGTAGGAGCCTTCTGCTTTACCCGAGAGGGGCAACCAATGTTTGTTGTGCATTGTGCAACACGATTACCTCTGTTCCTCCACCTGGGATGGAAATGTCTCAACTTTACTGTGGAGGCTGTAGGACGTTGCTAATGTACACTCGTGGAGCTACAAGTGTGAGATGTTCCTGCTGTCACACTGTAAACCTTGTTCCAGCATCTAATCAGGTAGCTCATGTCCATTGTGGGAACTGTCGGACAACCCTCATGTATCCTTATGGAGCTCCCTCAGTCAAATGTGCTCTTTGTCACTATATTACTAATGTCAGTATGAACAGTGGACGACTGCCAATCCCTGTCCATAGACCCAATGGGACAACCAATGTTGGAACATTACCTTCCACTTCAACATCAATGCCTCAATCTCAAAGTCAAACAGTAGTGGTAGAAAATCCAATGTCTGTGGATTCAAGTGGGAAATTGCAAGTTTCCTTAAAAGAAGTTGACATGTCACAGCCTGCAATGGTTCAATTGAAATCAATATTTTTCCAATCCAAGAGTTGGATGGAATTCCAAGCATTGCTTGATGAAATTACTGATATGATAGATTTTTACTGGTCATTTGAAAAAAGCAATTGGATAAAACTAGCTGCTTTGGCAATTGAGATATACAAATTTTCTCATTTGACTTTTATAGTTCCACACACGCAGCACTATTGTGTTTCGGATTTTCACAAGTCTGCTATGCTTCGAGAGTCTTGGGAGGGTCCTTCTTCTGCCAAAAAGTGTTTGATTCCAGACTCCACTGTAATTTCTCAAGGTTGTCGTGCGAGGTTGAGATCAGCAAACAAGATAATTGGAACTAGAAATGCAATTCTGCAGCTTTACCAAAATTCAGATTCAGATTCAGATTCAGATTCAGATTGTTCTCTAGTAGAACTGGAATCCCTTCCAAGACATGCGCAAGAAACAAAACATGAAGAGACTGAAAAGGGTGGAGATTCTGCTGATGAAGCTGAAATGGAGGAAGTGAGTGAGTATGAGAATCAAATGGCTAGTCACTCAACTCAAGTGGAAGAGCACAATGCATTGGAAGTATATTGTGCCCCTCTTGAGCAGGAACCTTTGGCTGAGGGTATTCAAGCATCATTTAACTCTAGGGAAAGAGAGGACAAGAAAAATAGCAAGACTATTTCAATGGTTGGACATTCATCCTCACAATTCAGCCTCAACCTTACTCACATGGTTAATATGTGGGACAATGAAGGTGATGATGAGGTTAATTCTGTTGGACAGTGCTCACCAAAGGACACAGTTGAAGGATACCAAGTGAAGGGAGAATTCATACCCTTGTTAAGAAAAATTCTCACTAAGCATGGAGATGTTTTTGAGAATTCTTTGATAACCACTGTAAAATTCCGATCGGCTTTGTTGGAGACAATATGTGAGATGATCTCAGAATTGGAAGGCAAGGATCTGAATAAAACCACAGACGATAGGCTTCACAACATGATTGATCTGGCAAAAGAAATGAAAAATATGAAAGTGAACATTGAGTGGCTCCACCTGAGGTTGGAGGAGATATACAAGGCAAGGCAGATTCTTAAACAATGTGGCATGCTGAAAGAGAGAAAAGATAGTAACAAAAAGGTGATTGAGAGTGTGAAGATAGAATTGGAACAATGTGAAGCAGAAAAGAAGGCATTGACAGCACAGTTAAAATCAGTGTGTGATAAAGAGAGTGCTTGTAAGGAGACACTGGCTAGAGCAGATGATGAGTCCAGTAGGATAAGGGAACATATCACATATGCTAAATCTAAAGTTAGACCCTTTTTTAATTGCTCTTTGGTGGATGGATTACTTTAG 1938 0.4076 MTRKYWRVEGHSSNVLILGDEYMQSQLVCNGCRSLLLYPRGATNVCCALCNTITSVPPPGMEMSQLYCGGCRTLLMYTRGATSVRCSCCHTVNLVPASNQVAHVHCGNCRTTLMYPYGAPSVKCALCHYITNVSMNSGRLPIPVHRPNGTTNVGTLPSTSTSMPQSQSQTVVVENPMSVDSSGKLQVSLKEVDMSQPAMVQLKSIFFQSKSWMEFQALLDEITDMIDFYWSFEKSNWIKLAALAIEIYKFSHLTFIVPHTQHYCVSDFHKSAMLRESWEGPSSAKKCLIPDSTVISQGCRARLRSANKIIGTRNAILQLYQNSDSDSDSDSDCSLVELESLPRHAQETKHEETEKGGDSADEAEMEEVSEYENQMASHSTQVEEHNALEVYCAPLEQEPLAEGIQASFNSREREDKKNSKTISMVGHSSSQFSLNLTHMVNMWDNEGDDEVNSVGQCSPKDTVEGYQVKGEFIPLLRKILTKHGDVFENSLITTVKFRSALLETICEMISELEGKDLNKTTDDRLHNMIDLAKEMKNMKVNIEWLHLRLEEIYKARQILKQCGMLKERKDSNKKVIESVKIELEQCEAEKKALTAQLKSVCDKESACKETLARADDESSRIREHITYAKSKVRPFFNCSLVDGLL 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01534 645 Coils Coil 569 603 - -
Spst3g01534 645 Coils Coil 645 645 - -
Spst3g01534 645 PANTHER PROTEIN LSD1 24 189 IPR040319 -
Spst3g01534 645 Pfam Arabidopsis phospholipase-like protein (PEARLI 4) 397 635 IPR007942 -
Spst3g01534 645 MobiDBLite consensus disorder prediction 339 377 - -
Spst3g01534 645 Coils Coil 368 388 - -
Spst3g01534 645 MobiDBLite consensus disorder prediction 342 357 - -
Spst3g01534 645 NCBIfam zinc finger domain, LSD1 subclass 26 56 IPR005735 -
Spst3g01534 645 NCBIfam zinc finger domain, LSD1 subclass 103 132 IPR005735 -
Spst3g01534 645 NCBIfam zinc finger domain, LSD1 subclass 65 95 IPR005735 -
Spst3g01534 645 Pfam LSD1 zinc finger 68 92 IPR005735 -
Spst3g01534 645 Pfam LSD1 zinc finger 106 130 IPR005735 -
Spst3g01534 645 Pfam LSD1 zinc finger 29 53 IPR005735 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g01534 Spst-Chr3 18748422 18756562 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Spst3g01534 PEARLI-4 1.5e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01534 - - vum:124848394 392.504