Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01517 ATGGTGAGAGTGGCATCGTACTTCGCAATGACTCTTGGTGCTTTCGTGTTCTGGCAGTCCATGGACAAAGTCCATGTCTGGATCGCTCTCCATCAAGACGAAAAGCAAGAGAGGTTGGAGAAGGAAGCGGAGATCAGAAGGGTTAGAGAAGAATTATTGAAGCAGCAGGCCAAACAGAAGGAGTCTCTTCACGCTCTTCACGACCATGATCCTCTGCCCCACACTCACTCTCGGATCTCTCTCGCAGATCCCCTTTCAACGCTTACCATCACCACCACCTTTTCTCTCTATCTCATGGATCCCTCTACTTGTCGTCCAGCTGTAGTAATCGATAATGGCTCCGGGTATACTAAAATGGGGTTTGCTGGTAATGTCGAGCCATGTTATATTATTCCGACTGTGGTTGCCGTTAATGAGTCGTTTCTGAATCAATCGAGGGCCGCTTCTAAAGCCAATTGGGTGGCCCAGCACAATGCCGGTGTTATGGCGGATCTTGATTTCTTCATTGGGGATGAGGCAGTTTCCAAGTCTCGATCTAGTAGCACTTACAACCTGAGCTACCCAATTCAGCATGGCCAGGTTGAGAATTGGGATACCATGGAGCGCTACTGGCAGCAGTGCATATTCAACTATTTGAGGTGTGATCCGGAGGATCACTATTTTCTCTTGACCGAGAGTCCATTGACTTCGCCTGAGAGTCGCGAGTATACTGGGGAAATCATGTTTGAGACTTTTAACGTACCTGGACTTTACATTGCTGTGAATTCTGTGCTTGCTCTTGCAGCTGGTTACACCACATCTAAGTGTGAGATGACAGGAGTTGTATTAGATGTTGGAGATGGGGCTGCTCATGTTGTACCTGTTGCAGACGGCTATGTTATTGGTAACAGCATCAAATCGATTCCTATTGCTGGAAAGGATGTTACTGTTTTTGTGCAGAATCTTATGCGGGAAAGAGGAGAGAATGTTCCACCAGAAGATTCTTTTGATGTGGCACGGAAAGTGAAGGAAATGTATTGCTACACCTGCTCTGACATTGTGAAGGTTGTCTTTAGTTCAATAGTTAGTTCTTTTGAAGAGTTTGTGCTTGCCATTGGCATATTGAGTGAATTTAATAAGCATGACAAAGAACCAACCAAATATATCAAGCATTGGAGAGGTATTAAACCAAAGACTGGGGCACCATATTCCTGTGATATTGGCTATGAACGATTTCTTGGCCCTGAGATTTTCTTTAATCCTGAGATAAATGGTAGTGACTTTACCACCCCTTTGCCAGTTGTAATAGACAAGTGCATTCAGTCTGCACCAATTGACACGAGGAGATCATTATACAAGAATGTAGTGTTGTCTGGAGGTTCAACCATGTTCAAGGATTTTCACAAGAGGTTGCAACGTGATCTAAGAAAAATTGTGGATACTCGTGTCCTTTTATCTGAAGCACGCTTAAATGGGGAGATAAAAGCGCAGCCAGTGGAGGGGGGTGGTGGTAGGAGAACCATGCAAGCTGACTTTAAGCTTGTCATACAAAGGCAGAATATGACGAGCATGGAGCAAGCATTTGCCGTTCAAATCCTGTTTTCAAGGGAATGTATTAAAGCAGCGATAGTTGATGAAGGAGGCAGTTATTTGATAAGACAGTTGAATGAATGGCTGCTTATTTTGACCCTCAATTCATCTTCTGATCTTTCTTCCCATCTATATACAGGGTGGTTGAAGTGA 1722 0.4431 MVRVASYFAMTLGAFVFWQSMDKVHVWIALHQDEKQERLEKEAEIRRVREELLKQQAKQKESLHALHDHDPLPHTHSRISLADPLSTLTITTTFSLYLMDPSTCRPAVVIDNGSGYTKMGFAGNVEPCYIIPTVVAVNESFLNQSRAASKANWVAQHNAGVMADLDFFIGDEAVSKSRSSSTYNLSYPIQHGQVENWDTMERYWQQCIFNYLRCDPEDHYFLLTESPLTSPESREYTGEIMFETFNVPGLYIAVNSVLALAAGYTTSKCEMTGVVLDVGDGAAHVVPVADGYVIGNSIKSIPIAGKDVTVFVQNLMRERGENVPPEDSFDVARKVKEMYCYTCSDIVKVVFSSIVSSFEEFVLAIGILSEFNKHDKEPTKYIKHWRGIKPKTGAPYSCDIGYERFLGPEIFFNPEINGSDFTTPLPVVIDKCIQSAPIDTRRSLYKNVVLSGGSTMFKDFHKRLQRDLRKIVDTRVLLSEARLNGEIKAQPVEGGGGRRTMQADFKLVIQRQNMTSMEQAFAVQILFSRECIKAAIVDEGGSYLIRQLNEWLLILTLNSSSDLSSHLYTGWLK 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01517 573 PANTHER ACTIN 107 498 IPR004000 -
Spst3g01517 573 Gene3D Actin; Chain A, domain 4 303 422 - -
Spst3g01517 573 SUPERFAMILY Actin-like ATPase domain 106 266 IPR043129 -
Spst3g01517 573 CDD NBD_sugar-kinase_HSP70_actin 108 304 - -
Spst3g01517 573 Gene3D - 108 255 - -
Spst3g01517 573 FunFam Actin-related protein 3 108 271 - -
Spst3g01517 573 SUPERFAMILY Actin-like ATPase domain 271 479 IPR043129 -
Spst3g01517 573 Coils Coil 31 58 - -
Spst3g01517 573 Pfam Actin 106 475 IPR004000 -
Spst3g01517 573 SMART actin_3 105 550 IPR004000 -
Spst3g01517 573 Gene3D - 256 476 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g01517 Spst-Chr3 18595057 18605721 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g01517 108 468 Cytoskeleton Gene Families AT3G12110 33.242 4.00e-60 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01517 K18584 - gmx:100780462 713.761