Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01505 ATGGGAGAAGATAGTAACAACACCGACACCGGTTCTCAGCGGAGAGCACATTCCCGATCAGTTTCCTGGACCGACCGGTCTCCGGTGACCCGGAAACCGCCGCGACCACTTCAGCCTCTTTTCATCAGGAAACACAGTGTCAAGGACTGGCCAAGCGCTGGCAGCGACGATCTCAACGAGTGGCTTCCGCCACCGACCCCAAGAGGGTCCACCAAAGGATCATCGAGCTCGGGTTCGGGTCAAGTTTTTCAGCTTAGGAGAGACAAGTTCGCTTTCTACGACAAAGAATGTTCCAAAATCGCGGAGCACGTGTACTTGGGGAGTGACACGGTGGCAAAGAGCCAGGAGCTTTTGCGGCGGCACGGGATAACGCACGTGCTCAATTGCGTAGGGTTCGTTTGCCCCGAGTATTTCAAAACCGACTTCGTCTACAAAACGCTATGGCTGCGAGACAGTCCCTCGGAGGACATCACCAGCATTCTCTACGACGTTTTCGATTACTTCGAGGATGTCCGACAACAGGGTGGGCGCGTGCTCGTGCACTGCTGCCAGGGCGTGTCGCGCTCGACCTCGTTGGTCATCGCGTATCTCATGTGGAGGGAGAGCAAGAGCTTCGAGGACGCGTTTCACTTCGTGAAGAACGCACGCGGCATCACGAATCCGAACATAGGTTTCGCGTGTCAACTGTTGCAGTGTCAGAAGCGCGTCCATGCCACGCCGCCGAGTCCTAGTTCTGTTCTCAGAATGTATAGGATGGCTCCTCATTCTGCCTATGACCCTCTTCACCTTGTTCCTAAGATGGTTAACCACCCTTGCGCCCACGCGCTTGATTCGCGTGGGGCATTTATTGTGCATGTTCCTTCTACTTTATATGTGTGGATTGGGAAGGAGTGTGGCTCGGTGATGTGTTGCAAGGCGCGCTATGCAGCTTGTCAGGTTGTTCGATATGAGAGGGCCTCTGGGGAGATTGTTAGTGTGGTTGAGGATGAAGAGCCTGAAGAGTTTTGGGTTGCTCTTTCTAACAAGGAAGTGTTGGTGGAGGATAAAGAGGTCAAGAATGTGGAAAGAATGGAGGTTGATGTGGGGGTATATCCCCGGAGGGTTGAGGAATATGATTTGGATTTTGGGATTTTTCATAAGGCACTTGCTGGTGGGGTTGTTCCACCTTTTTCTTTGTCTAATGCTGGATCAGAAAATTGCCTCCCTTCAAGGGAAAATGGGTGGGGGAGATTGACTAGGAAGCTTACTAGTGGTATCATGAAAGGGTTGCTCGCATCCTCTAAGTGCTGTGAGTCAAGTATGAACATTGAAGAGGAAAATCAACATAAGAATGTTGATCCTTTGCCACCATCTTCAAAACCTTTCTATACTAAAGATGCATCTAAATCAGAGAGTTGCTCTTTACTTCAGAAAGAAGGTGTCTCATCAACTTCAGAGGCTTTTTTGGCTAATCGCACCTTGGTAAGGGAAGAGTCTAGTTTAACGTTCGAAGGGTCTAACCCCTCCTTTGCAGAGTGCAGATGGAGTAATCAGCCACCTCGTATGGTGCTACCCTCAACCGGCAAATCGTCCCGCGCCAGTAGGATCCGAGTAAGATCTAAGTCAATCTCATTGCCTGCCTTAGATGATACATTGATGAGGGATGCCAGTTGCAAGCAATTCGACCATGAAAACAGTGGAAAATAG 1686 0.503 MGEDSNNTDTGSQRRAHSRSVSWTDRSPVTRKPPRPLQPLFIRKHSVKDWPSAGSDDLNEWLPPPTPRGSTKGSSSSGSGQVFQLRRDKFAFYDKECSKIAEHVYLGSDTVAKSQELLRRHGITHVLNCVGFVCPEYFKTDFVYKTLWLRDSPSEDITSILYDVFDYFEDVRQQGGRVLVHCCQGVSRSTSLVIAYLMWRESKSFEDAFHFVKNARGITNPNIGFACQLLQCQKRVHATPPSPSSVLRMYRMAPHSAYDPLHLVPKMVNHPCAHALDSRGAFIVHVPSTLYVWIGKECGSVMCCKARYAACQVVRYERASGEIVSVVEDEEPEEFWVALSNKEVLVEDKEVKNVERMEVDVGVYPRRVEEYDLDFGIFHKALAGGVVPPFSLSNAGSENCLPSRENGWGRLTRKLTSGIMKGLLASSKCCESSMNIEEENQHKNVDPLPPSSKPFYTKDASKSESCSLLQKEGVSSTSEAFLANRTLVREESSLTFEGSNPSFAECRWSNQPPRMVLPSTGKSSRASRIRVRSKSISLPALDDTLMRDASCKQFDHENSGK 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01505 561 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 155 216 IPR000387 GO:0016311|GO:0016791
Spst3g01505 561 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 85 238 IPR029021 -
Spst3g01505 561 Pfam Dual specificity phosphatase, catalytic domain 104 234 IPR000340 GO:0008138|GO:0016311
Spst3g01505 561 CDD DSP 97 231 - -
Spst3g01505 561 MobiDBLite consensus disorder prediction 1 27 - -
Spst3g01505 561 SMART VILL_6 251 342 IPR007122 GO:0051015
Spst3g01505 561 ProSitePatterns Tyrosine specific protein phosphatases active site. 180 190 IPR016130 GO:0016311|GO:0016791
Spst3g01505 561 Gene3D Protein tyrosine phosphatase superfamily 74 238 IPR029021 -
Spst3g01505 561 MobiDBLite consensus disorder prediction 1 80 - -
Spst3g01505 561 ProSiteProfiles Dual specificity protein phosphatase domain profile. 96 238 IPR020422 GO:0006470|GO:0008138
Spst3g01505 561 SUPERFAMILY Actin depolymerizing proteins 242 348 - -
Spst3g01505 561 PANTHER MKPA PROTEIN 15 527 - -
Spst3g01505 561 Gene3D Severin 248 345 IPR029006 -
Spst3g01505 561 SMART dsp_5 96 235 IPR020422 GO:0006470|GO:0008138
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g01505 Spst-Chr3 18506826 18508511 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g01505 36 132 Protein tyrosine phosphatase (PTP) family AT3G55270 49.533 7.31e-26 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01505 - - vra:106766435 903.279
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g01505 3 18506826 18508511 Spst3g01505 3 18506826 18508511 ECH
Spst3g01505 3 18506826 18508511 Spst1g01949 1 27678721 27681558 PCT