Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01490 ATGCTCCAATTTCTCATTGCACCATTTAATCATGCCACACACTTTGGCAGAACAAATGCCACAATTTCCACATCCATAGACCACTACTTCACCCTCTCAACACCTACCTTTTCCGTTCCACCAATGCCTCCTAAACCTGAAAACCCAGATCCTCAGCATGGAACCTCAACATCTAACCCTCTCAGATCACCAAATTCATTAACTTCCATTTGTCCGCCTCCTGTGAAGTCACTCGAACATCTTCCCCAACAAGAACATCATCATAGACATGTAGTTCAACTAGGGGTGACTGTGACGGCATGCATGCTTGGCGTGTTCATGTTTCTCTGCGCCGTGTCCGTACTCATAAGGTACTTTTACTCCAGGAGATACAACCGCAACCCTAACGGAAGAAGAGACACGCCGATATTGTTCGCTTTGAACGGAGGAGATTCTCCCACTTCGGATAACGATGATGACGTGGACCAAGACCACTTGGCGGTTGTCCACCCCATATGGTACATCCGCACCGTCGGTCTCCAACAATCGCTCATAGACTCCATCACCGTCTTCAAATACAGAAAAAACGAAGGAATCATAGACAGCTCCGAATGTTCTGTGTGCCTCGGAGAGTTCGAACACGACGACACTCTCAGGTTGTTGCCCAAGTGCAGCCACGCTTTCCACGTGCCTTGCATTGACACCTGGCTCCGCTCGCACAAAAACTGTCCCCTGTGTCGCGCGCCTGTGGTCGCCGATGAAACTGGAGCCGCTGACCAGAATCATCACACGGTTTCAACCGTGTCTGATCATCAGAGTCAGAATCATGAGGCTCGGGCGGAGGATTCTGATGAAGCGGTTGGATTAGAAGACGGTGGTGGTTCTGGTGAGTCTTCTGGTGGAATAGAAACACAGCCTCTGAGGAGATCGGTTTCCGTGGATTCTTCTTCTGCTTCTGCTTCTGCTTCAAATTCAACGGTGTTTCGTGATGTGAGGGTGGATATAGACACCCCTTATGACGAAAAATTGGGTTCAAGTAACAAGGGTGTGATTCACATGAGTATTGAGAAACATGGAAGTGGGAGTTCAAGTTCAACTACAATTCACAAGTTGGCTTCTATTGGACGTGCCTTACAAAAGGGATCAGTCTCAATGAGAAGATCGTTTTCACATAACACGAAATTTTCGTTATCCGCGCACTGTAGGAGTCAGAGCTCTACTCTTCCATTGTAA 1212 0.4794 MLQFLIAPFNHATHFGRTNATISTSIDHYFTLSTPTFSVPPMPPKPENPDPQHGTSTSNPLRSPNSLTSICPPPVKSLEHLPQQEHHHRHVVQLGVTVTACMLGVFMFLCAVSVLIRYFYSRRYNRNPNGRRDTPILFALNGGDSPTSDNDDDVDQDHLAVVHPIWYIRTVGLQQSLIDSITVFKYRKNEGIIDSSECSVCLGEFEHDDTLRLLPKCSHAFHVPCIDTWLRSHKNCPLCRAPVVADETGAADQNHHTVSTVSDHQSQNHEARAEDSDEAVGLEDGGGSGESSGGIETQPLRRSVSVDSSSASASASNSTVFRDVRVDIDTPYDEKLGSSNKGVIHMSIEKHGSGSSSSTTIHKLASIGRALQKGSVSMRRSFSHNTKFSLSAHCRSQSSTLPL 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01490 403 SMART ring_2 198 239 IPR001841 -
Spst3g01490 403 SUPERFAMILY RING/U-box 183 246 - -
Spst3g01490 403 CDD RING-H2_EL5-like 197 240 - -
Spst3g01490 403 Pfam Ring finger domain 197 240 IPR001841 -
Spst3g01490 403 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 93 248 IPR044675 -
Spst3g01490 403 FunFam RING-H2 finger protein ATL54 173 246 - -
Spst3g01490 403 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 173 248 IPR013083 -
Spst3g01490 403 MobiDBLite consensus disorder prediction 250 316 - -
Spst3g01490 403 MobiDBLite consensus disorder prediction 37 77 - -
Spst3g01490 403 MobiDBLite consensus disorder prediction 291 316 - -
Spst3g01490 403 ProSiteProfiles Zinc finger RING-type profile. 198 240 IPR001841 -
Spst3g01490 403 MobiDBLite consensus disorder prediction 51 72 - -
Spst3g01490 403 MobiDBLite consensus disorder prediction 252 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g01490 Spst-Chr3 18360309 18361520 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g01490 80 244 C3H Transcription Factor Family AT1G72220 42.857 3.49e-39 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01490 - - gmx:102663026 363.999
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g01490 3 18360309 18361520 Spst1g01967 1 27829842 27831011 PCT