Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01487 ATGGGTGAAGAGGGAGAAGAGGTGTCAATAGAGAAGGAACAAAGCATTGGAGTTTATGCAAATGAGTGGTTCTATGATCCGCGGTTTGCACTCATGAAGAGACTTGGCAGCTCCGATTCTCTGGGTGCTCTCATGACCATTTGTCCACCAACAGACGAACACAGTCCGAGGAACAACCACGTGTATGGCAGGGAGTTCCAGTCCATGCTGGAAGGACTAGACGATGAAGGGTGTGTGGAGGAACCGGGACACCACGCCGAGAAGAAACGAAGACTTAGCGTGGATCAAGTGAAGGCTTTGGAGAAGAACTTCGAAGTAGAGAACAAACTCGAACCTGACAGAAAGGTGAAACTGGCACAAGAACTTGGCCTGCAACCAAGACAAGTTGCGGTTTGGTTCCAAAACCGTCGAGCCAGATGGAAAACAAAGCAATTGGAAAGAGACTATGGAGTCCTCAAAGCCAATTATGATTCCCTCAAACTCAACTACGACACCCTCCAACAAGACAACGAAGCCTTACTCAAAGAGATAAAGGAATTGAAATCAAGGTTGCTGCTGCAAGAAGAGAGCAACAATGAAAGCGATGTTTCGGTGAAGGAAGAGATGATAACGCTGCAAGATAGTAACCCACTTTGTGAAACCGCCATTCCTGGATCCGAGTCTAAGGATTTGAGTTACGAATGTTTTAACAAGAGTGATGATATTTTGGGGGGTTTCAAAGACGGTTCTTCCGACAGCGACTCCAGCGCGATCTTGAACGAAGAGATTGCGAACAACAACGACAACAGTCCCAACAACGCGACGAATTCATCTTCTGGGGTTATGCAAAGTCAGAGTTTTTTGTCGTCGTCTTCTCCGATGAACTGTTTCCAGTTCCAGAAACAGTTTCCGACGCAGTACGTGAAGATGGAGGAGCATAACTTTCTGAGCGCGGACGAGGCGTGCAATTTCTTCTCGGATGAACAAGCGCCCACGCTGCAGTGGTACTGTTCAGAGGAGTGGAGTTAA 1008 0.4742 MGEEGEEVSIEKEQSIGVYANEWFYDPRFALMKRLGSSDSLGALMTICPPTDEHSPRNNHVYGREFQSMLEGLDDEGCVEEPGHHAEKKRRLSVDQVKALEKNFEVENKLEPDRKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYDSLKLNYDTLQQDNEALLKEIKELKSRLLLQEESNNESDVSVKEEMITLQDSNPLCETAIPGSESKDLSYECFNKSDDILGGFKDGSSDSDSSAILNEEIANNNDNSPNNATNSSSGVMQSQSFLSSSSPMNCFQFQKQFPTQYVKMEEHNFLSADEACNFFSDEQAPTLQWYCSEEWS 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01487 335 Pfam Homeodomain 88 141 IPR001356 GO:0003677
Spst3g01487 335 SUPERFAMILY Homeodomain-like 69 145 IPR009057 -
Spst3g01487 335 CDD homeodomain 88 144 IPR001356 GO:0003677
Spst3g01487 335 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 80 329 IPR045224 GO:0003700
Spst3g01487 335 MobiDBLite consensus disorder prediction 256 279 - -
Spst3g01487 335 Pfam Homeobox associated leucine zipper 143 184 IPR003106 GO:0006355|GO:0043565
Spst3g01487 335 ProSitePatterns 'Homeobox' domain signature. 118 141 IPR017970 GO:0000981|GO:0006355
Spst3g01487 335 SMART HOX_1 86 147 IPR001356 GO:0003677
Spst3g01487 335 Gene3D - 83 150 - -
Spst3g01487 335 ProSiteProfiles 'Homeobox' domain profile. 83 143 IPR001356 GO:0003677
Spst3g01487 335 Coils Coil 156 190 - -
Spst3g01487 335 PRINTS Lambda-repressor HTH signature 114 123 IPR000047 GO:0003677
Spst3g01487 335 PRINTS Lambda-repressor HTH signature 123 139 IPR000047 GO:0003677
Spst3g01487 335 FunFam Homeobox-leucine zipper protein HAT5 81 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g01487 Spst-Chr3 18336689 18338326 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g01487 32 335 Homeobox Transcription Factor Family AT4G40060 48.758 8.69e-83 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Spst3g01487 Homeodomain 3.8e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01487 K09338 - gmx:100796213 469.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g01487 3 18336689 18338326 Spst3g01487 3 18336689 18338326 ECH
Spst3g01487 3 18336689 18338326 Spst1g01970 1 27851546 27852825 PCT