Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01466 ATGACCTATGCTGGTGTGTGGACATTGTGTCAGTGGTTGATGCCAGTAGAAATGGACTTCTTATTTGTGTTATTGCTTGTGGGTTGCTTATGTTCTTTTGTGTTTCCTGATACGCAAGGAGATGCACTATTTGCATTGAAGCTATCATTGAATGCTTCAGCTGACCAGCTTACTGACTGGAATCAGAATCAAGTGAATCCTTGTACTTGGTCACATGTTTACTGTGACTCAAACAACAATGTCATGCAAGTATCACTAGCCTATATGGGATTCACTGGATACTTGACCCCAAGAATAGGAGTTCTTCAATATGTTACAGCTCTTTCTTTGCAAGGCAATGGCATCAGTGGAAACATACCAAAAGAGATAGGAAACATGACAAGCTTGTGCAGGTTGGATTTGGAAAGCAATAAATTAACTGGAGAAATACCCTCTTCCCTTGGTAATCTTAAAAAGCTTCAATTCTTAACATTGAGTCAAAACAATCTTAGTGGGACAATTCCTGAATCACTTGCCACTCTTCCAATCTTGATCAATGTTATGCTAGATTCAAATAATCTGAATGGCAAAATCCCAGAGCGGTTATTTGAGGTTTCTAAATACAATTTCACTGGAAATAATTTGGATTGTGGTGTGAATTATCATCAACTTTGCGAATCTGATAATGCGGATCAAGGTTCATCACATAAACCAAAAACTGGCCTCATAGTTGGAATTGTTATAGGGTTAGTTGTTATTCTTTTCCTTGGTGGTCTGGTGTTCTTTTGGTGCAAGGGTAGACAAAAGCACAAAAGGCCTGACATTTATGTAGATGTTCCAGGTGAAGTGGATAGGCGAATTGCATTTGGTCAACTAAAGAGATTTTCATGGAGAGAACTTCAGATAGCCACAGACAACTTCAGTGAGAAGAATGTTTTGGGTCAGGGAGGCTTTGGAAAGGTTTATAAAGGTGTTCTTGCTGATAACATAAAAGTTGCTGTCAAAAGGTTAACTGATTATGAAAGTCCTGGGGGAGATGCAGCTTTCCAGCGTGAGGTTGAAATGATAAGTGTAGCTGTGCATAGGAACCTGTTACGGCTGATTGGGTTTTGTACTACCCCAACTGAGCGCCTCTTAGTTTATCCCTTTATGCAGAACTTAAGTGTTGCCTATCGTCTTCGAGAACTCAAACCTGGTGAACCTGTTCTGGACTGGCCTACAAGAAAACGAGTAGCCCTGGGAACAGCCCGAGGCTTGGAATATCTTCACGAGCATTGCAATCCTAAGATTATTCATCGGGATGTGAAGGCAGCTAATGTATTACTAGATGAAGATTTTGAAGCTGTTGTTGGTGATTTTGGCTTGGCCAAGTTAGTTGATGTTCGAAAAACTAACGTCACAACTCAAGTTCGTGGGACAATGGGCCACATAGCTCCAGAATATTTATCCACTGGAAAGTCTTCTGAAAGGACCGATGTTTTTGGTTATGGGATTATGCTTCTGGAGCTTGTTACAGGTCAACGAGCAATTGACTTTTCACGATTAGAAGAGGAAGATGATGTGCTGTTACTTGACCATGTTAAGAAATTAGAACGGGAGAAAAGACTAGATGCCATTGTTGATCGGAACCTAAATAAAAATTACAACATACAAGAGGTAGAAATGATGATACAAGTTGCATTGCTCTGTACGCAAGCAACACCAGAGGACCGTCCACCAATGTCTGAGGTCGTAAGAATGCTAGAAGGAGAAGGGTTGGCTGAAAGATGGGAGGAATGGCAGCATGTGGAGGTCAATCGGAGGCAAGAATACGAGAGATTACAAAGAAGATTTGATTGGGGAGAAGATTCTGTCTATAATCAAGATGCCATCGAGTTGTCTGGTGGGAGATGA 1872 0.4097 MTYAGVWTLCQWLMPVEMDFLFVLLLVGCLCSFVFPDTQGDALFALKLSLNASADQLTDWNQNQVNPCTWSHVYCDSNNNVMQVSLAYMGFTGYLTPRIGVLQYVTALSLQGNGISGNIPKEIGNMTSLCRLDLESNKLTGEIPSSLGNLKKLQFLTLSQNNLSGTIPESLATLPILINVMLDSNNLNGKIPERLFEVSKYNFTGNNLDCGVNYHQLCESDNADQGSSHKPKTGLIVGIVIGLVVILFLGGLVFFWCKGRQKHKRPDIYVDVPGEVDRRIAFGQLKRFSWRELQIATDNFSEKNVLGQGGFGKVYKGVLADNIKVAVKRLTDYESPGGDAAFQREVEMISVAVHRNLLRLIGFCTTPTERLLVYPFMQNLSVAYRLRELKPGEPVLDWPTRKRVALGTARGLEYLHEHCNPKIIHRDVKAANVLLDEDFEAVVGDFGLAKLVDVRKTNVTTQVRGTMGHIAPEYLSTGKSSERTDVFGYGIMLLELVTGQRAIDFSRLEEEDDVLLLDHVKKLEREKRLDAIVDRNLNKNYNIQEVEMMIQVALLCTQATPEDRPPMSEVVRMLEGEGLAERWEEWQHVEVNRRQEYERLQRRFDWGEDSVYNQDAIELSGGR 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01466 623 ProSitePatterns Protein kinases ATP-binding region signature. 306 328 IPR017441 GO:0005524
Spst3g01466 623 Gene3D Transferase(Phosphotransferase) domain 1 377 594 - -
Spst3g01466 623 SMART serkin_6 300 574 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst3g01466 623 Gene3D Phosphorylase Kinase; domain 1 269 376 - -
Spst3g01466 623 Pfam Protein kinase domain 301 572 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst3g01466 623 FunFam Putative LRR receptor-like serine/threonine-protein kinase 36 220 - -
Spst3g01466 623 SUPERFAMILY Protein kinase-like (PK-like) 280 575 IPR011009 -
Spst3g01466 623 SUPERFAMILY L domain-like 39 208 - -
Spst3g01466 623 FunFam Somatic embryogenesis receptor kinase 1 269 376 - -
Spst3g01466 623 ProSitePatterns Serine/Threonine protein kinases active-site signature. 423 435 IPR008271 GO:0004672|GO:0006468
Spst3g01466 623 CDD TM_EGFR-like 231 265 - -
Spst3g01466 623 Gene3D Ribonuclease Inhibitor 36 220 IPR032675 -
Spst3g01466 623 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 22 585 - -
Spst3g01466 623 Pfam Leucine rich repeat 105 163 IPR001611 GO:0005515
Spst3g01466 623 Pfam Leucine rich repeat N-terminal domain 36 76 IPR013210 -
Spst3g01466 623 ProSiteProfiles Protein kinase domain profile. 300 579 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst3g01466 623 FunFam Somatic embryogenesis receptor-like kinase 1 377 594 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g01466 Spst-Chr3 18156753 18163434 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g01466 17 623 Receptor kinase-like Gene Family AT5G10290 77.100 0.0 933
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Spst3g01466 Pkinase 1.7e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01466 - - gmx:100793416 1111.67