Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01465 ATGCCAAACACCACTCAAAAATTCCCAATCAACAACAACAACATCGTCAACATCGATTCCCTCCATGTTTCCCTGCGCAACCTCTCCCAACTCAGCACCCGAATGGATTCGCTTCAAAGCTTTGTCTCCCAATCCATTCAATCCCACACTCTCCTCACACACCAACAAATGAACATCGTGTCCAACGAGATCCTAGCCGCCATTCGCCACGTTATCACCAACGGCGCCGCCTTAGTCGCAGCCTCAGAAAACGTGCTTCCCCTTTCGGAGACTCCCACGTTGGGCTCTCCGATCTTAAACAACAACGAAACAAACTTGGTGGAGGTCGACGCGATGGAACTCCTGGCGCAGAACCTCCACTTCTGCGAGGTGTGCGGGAAAGGCTTCACGCGCGACGCGAACCTTAGGATGCACATGCGCGCTCACGGGGACGAGTTCAAGACTCCGGACGCGCTCGCGAGCAGGGCGCGTGGAGAGCTGCGCGTGAAGGCGACACGGTTTTCGTGCCCCTTCGAGGGATGCAACCGCAACAAGACCCACAAGAAGTTCAGGCCGTTGAAGTCGGTGTTCTGTCTGAGGAACCATTTCAAGAGGAGACACTGTCCCAAGACGCTGTCGTGCGAGCGGTGTCGGAAGAAGAGTTTCGCGGTGCTCTCGGACTTGAGGAGTCACGTGAAGCAGTGTCGAGGAGAAGCCACGTGGAAGTGCTCTTGCGGAACCACGTTTTCGCGGAAGGACAAGCTGTTTGGACACGTGGCGCTGTTCGAGGGGCATTTGCCGATCCTTGAAGAGGAGACGGAGACGCCAGTGGCAGCGGCGGAGGAGGAGGGGCTGGTGAAGGAAAGTGACGGTGGTTTGGATGGGTTACCTGAAGGGTTCTTTGATGGGTTGGATGAATTTGGGTTTGGTTCCACCGGCTGA 921 0.5603 MPNTTQKFPINNNNIVNIDSLHVSLRNLSQLSTRMDSLQSFVSQSIQSHTLLTHQQMNIVSNEILAAIRHVITNGAALVAASENVLPLSETPTLGSPILNNNETNLVEVDAMELLAQNLHFCEVCGKGFTRDANLRMHMRAHGDEFKTPDALASRARGELRVKATRFSCPFEGCNRNKTHKKFRPLKSVFCLRNHFKRRHCPKTLSCERCRKKSFAVLSDLRSHVKQCRGEATWKCSCGTTFSRKDKLFGHVALFEGHLPILEEETETPVAAAEEEGLVKESDGGLDGLPEGFFDGLDEFGFGSTG 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01465 306 Gene3D Classic Zinc Finger 165 256 - -
Spst3g01465 306 ProSitePatterns Zinc finger C2H2 type domain signature. 122 142 IPR013087 -
Spst3g01465 306 Gene3D Classic Zinc Finger 110 164 - -
Spst3g01465 306 ProSiteProfiles Zinc finger C2H2 type domain profile. 120 147 IPR013087 -
Spst3g01465 306 Pfam Zinc-finger of C2H2 type 121 140 - -
Spst3g01465 306 SUPERFAMILY beta-beta-alpha zinc fingers 117 145 IPR036236 -
Spst3g01465 306 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 100 268 IPR044300 GO:0010044|GO:0010447
Spst3g01465 306 FunFam B-cell CLL/lymphoma 6, member B 118 142 - -
Spst3g01465 306 SMART c2h2final6 120 142 IPR013087 -
Spst3g01465 306 SMART c2h2final6 167 200 IPR013087 -
Spst3g01465 306 SMART c2h2final6 205 226 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g01465 Spst-Chr3 18121479 18122399 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g01465 106 285 C2H2 Transcription Factor Family AT1G34370 52.973 2.32e-67 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Spst3g01465 zf-met 0.0013 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01465 - - vum:124823301 519.235