Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01409 ATGAGAAGGTCTGTGTGTGAGTTCTTTTATGAACTTTATGCCAAGACAATAGTTCTTGTAACATACATGCTAGTAGAACTTATCCTTATCATTCGCTACCTTAAGTCAGATACACCTCCGATATCAACCACTCAATACCTCAGTTTCATCGAAGAGAAGAACCCCACAATTCGGTGCACCACAAGACTCAAGGCAGAGCACATAGACTGCAGAGTGTGCCTCTCTGAATTCCAGGAAGGGGAGAAGGTGAGGAACCTCAACTGCAGACACACTTTTCACAAGGATTGCTTGGACCAGTGGTTGCAGCAATACTGTGCTACTTGCCCACTTTGCAGGCACAAGGTCTTGCCAGATCATGTTGTGGCCAACTACAACCTCCTTCAAAATCAGGTACAAGAAGAAGAAGAAGAAGAGTATGATGGCAATGATCACCAACTCATCTTTTTGTTATCTGCATTAAGGGGTGGTAACACTTGGCACACATATCTTTGA 492 0.437 MRRSVCEFFYELYAKTIVLVTYMLVELILIIRYLKSDTPPISTTQYLSFIEEKNPTIRCTTRLKAEHIDCRVCLSEFQEGEKVRNLNCRHTFHKDCLDQWLQQYCATCPLCRHKVLPDHVVANYNLLQNQVQEEEEEEYDGNDHQLIFLLSALRGGNTWHTYL 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01409 163 SMART ring_2 70 111 IPR001841 -
Spst3g01409 163 Pfam Ring finger domain 69 112 IPR001841 -
Spst3g01409 163 SUPERFAMILY RING/U-box 49 123 - -
Spst3g01409 163 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 37 117 IPR013083 -
Spst3g01409 163 ProSiteProfiles Zinc finger RING-type profile. 70 112 IPR001841 -
Spst3g01409 163 PANTHER - 4 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g01409 Spst-Chr3 17573921 17574412 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g01409 69 122 C3H Transcription Factor Family AT1G15100 57.407 9.36e-18 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01409 K16282 - gmx:102669811 263.077
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g01409 3 17573921 17574412 Spst3g01409 3 17573921 17574412 ECH
Spst3g01409 3 17573921 17574412 Spst1g02027 1 28527910 28528401 PCT