Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01406 ATGGATGTTCCATCCTCACAGTTTGTTTCCTCAAGAAGAATGGGAGTGTATGATCCTATCCACCAAATTAGCATGTGGGAAGAAAATTTCAAAAGTAATGCTAATACTTTAACTGTATCCACCTCCATAATGGAAGAGCTGGACATGAAGTTAGATAATCAAGTTCAGGTGCAATCAGAGGAGGCTTCACATGGAATATTTGGAACATCTGTGAAGTACGACCTAGATGATAATAGACTAACTGATAAGATACAAAGACGTCTTGCACAAAATCGAGAGGCCGCTCGTAAGAGTCGTTTGAGGAAAAAGGCATACGTGCAGCAGTTAGAATCATGTCGTTTGAAGCTGATGCAGTTAGAGCAAGAGGTAGATCATGCTAAACAACAGGGATTGTATATTGGTGACGGACTGGGTTCTAACAATTTGGGTTTTGCTGGCTCTGTCAATTCAGGAATAACAATTTTTAAGATGGAGTATGGACATTGGGTGGAGGAGCAAAATAGACAAATCTTGGAACTGAGAACTGCTTTAAGTTCTCATATAGATGACACACAACTGGGGACACTTGTACAAAGGATAATGAACCACTACTCCAAACTCTTTAGCATGAAATCTGCTGCTGCAAAAGCAGATGTTTTCTACGTAATGTCTGGTATGTGGAAGACAACAGCTGAACGATTTTTCTTGTGGATTGGAGGATTTCGCCCCTCTGAACTTCTAAAGGTTCTGATCCCTCTGAGTGAACCTTTGACAGAGCAACAACGGTTTGATACCTACGGACTTGAAAAATCATGCCAACAAGCAGAAGATGCCCTTTCACAAGGTATGGAGAAACTTCAGCAAATGCTTGCTGACAGTGTTGGGCCAGGACACCTAGTTGAAGGAACTCACCTTCCACAGATGGATACTGCAATGGAGAGGCTGGAAGCTCTGGTGAGCTTTGTGAACCAGGCTGATCATCTACGACAAGAAACATTGCGGCAAATGTATCGAATACTTAGCATACGTCAGATTGGTCAGTTCCTGCTTGTTCTTGGGGAATATTTTCAACGTTTAAGGGCTTTGAGCAAACTTTGGGCTAATCGTCCTCAACAACAAGGACTTGCTTAG 1110 0.4216 MDVPSSQFVSSRRMGVYDPIHQISMWEENFKSNANTLTVSTSIMEELDMKLDNQVQVQSEEASHGIFGTSVKYDLDDNRLTDKIQRRLAQNREAARKSRLRKKAYVQQLESCRLKLMQLEQEVDHAKQQGLYIGDGLGSNNLGFAGSVNSGITIFKMEYGHWVEEQNRQILELRTALSSHIDDTQLGTLVQRIMNHYSKLFSMKSAAAKADVFYVMSGMWKTTAERFFLWIGGFRPSELLKVLIPLSEPLTEQQRFDTYGLEKSCQQAEDALSQGMEKLQQMLADSVGPGHLVEGTHLPQMDTAMERLEALVSFVNQADHLRQETLRQMYRILSIRQIGQFLLVLGEYFQRLRALSKLWANRPQQQGLA 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01406 369 PANTHER TRANSCRIPTION FACTOR TGA9 4 365 - -
Spst3g01406 369 Coils Coil 102 129 - -
Spst3g01406 369 Pfam Seed dormancy control 170 244 IPR025422 GO:0006351|GO:0043565
Spst3g01406 369 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 86 101 IPR004827 GO:0003700|GO:0006355
Spst3g01406 369 Pfam bZIP transcription factor 82 111 IPR004827 GO:0003700|GO:0006355
Spst3g01406 369 Gene3D - 82 131 - -
Spst3g01406 369 SMART brlzneu 79 139 IPR004827 GO:0003700|GO:0006355
Spst3g01406 369 Coils Coil 265 285 - -
Spst3g01406 369 ProSiteProfiles DOG1 domain profile. 152 362 IPR025422 GO:0006351|GO:0043565
Spst3g01406 369 FunFam BZIP family transcription factor 82 131 - -
Spst3g01406 369 SUPERFAMILY Leucine zipper domain 83 125 IPR046347 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g01406 Spst-Chr3 17530372 17534485 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g01406 1 362 Calmodulin-binding Proteins AT5G65210 63.934 1.21e-170 478
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Spst3g01406 DOG1 1e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01406 K14431 - gmx:100780003 657.907
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g01406 3 17530372 17534485 Spst3g01406 3 17530372 17534485 ECH
Spst3g01406 3 17530372 17534485 Spst1g02030 1 28556195 28559992 PCT