Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01394 ATGACAGGGAAGAGAAACCAAACAACAAGCAGTCCTGTGGGAAGTCCAACATCTGGTAACATCTCAGACAGCTCCTCAAAAGAACAAGACAGGTTCCTCCCCATAGCCAACGTTAGCCGTATCATGAAAAGGGCACTCCCAGCCAATGCCAAAATCTCAAAGGAAGCCAAGGAAACAGTTCAAGAGTGTGTGTCTGAGTTCATTAGCTTCATCACTGGTGAGGCCTCTGACAAGTGCCAGAGGGAAAAGAGGAAGACCATCAATGGTGACGATCTTCTATGGGCCATGACAACCCTAGGATTTGAGAACTATGTCGGACCCTTAAAGCTCTACCTCAATAACTACAGGGAAACTGAAGGAGAAAAGAGTTCCATGGCCAAACAAGAAGAACACTCTCCAACCGATCAAACTCATCAAACCAATGATGGGGTGCCTCATTCTGTGACAACCAAAGCAGACTTCAACACTTTCAGTGGTGGCTTCTATTCTGTGGGGCCTCAAGCAACAGCTCCAAAGAGCTTCACTGATATTGGAGGGATCAACGGTTATAGAGAAAGCTCCATGAACAGTGTCATTTCTCAAAGTGCGGTCAGTGGTGATCAAGATGCAAGTGGTAATAGATTGATGCCACCCAACCTACGTTATAGGGTTGAATGGTAG 660 0.4621 MTGKRNQTTSSPVGSPTSGNISDSSSKEQDRFLPIANVSRIMKRALPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKLYLNNYRETEGEKSSMAKQEEHSPTDQTHQTNDGVPHSVTTKADFNTFSGGFYSVGPQATAPKSFTDIGGINGYRESSMNSVISQSAVSGDQDASGNRLMPPNLRYRVEW 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01394 219 ProSitePatterns NF-YB/HAP3 subunit signature. 63 79 IPR003956 GO:0005634|GO:0006355|GO:0043565
Spst3g01394 219 PRINTS CCAAT-binding transcription factor subunit A signature 98 116 - -
Spst3g01394 219 PRINTS CCAAT-binding transcription factor subunit A signature 60 78 - -
Spst3g01394 219 PRINTS CCAAT-binding transcription factor subunit A signature 79 97 - -
Spst3g01394 219 Gene3D Histone, subunit A 19 151 IPR009072 GO:0046982
Spst3g01394 219 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 32 96 IPR003958 -
Spst3g01394 219 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 14 140 IPR027113 GO:0001228|GO:0006355|GO:0016602
Spst3g01394 219 MobiDBLite consensus disorder prediction 121 136 - -
Spst3g01394 219 FunFam Nuclear transcription factor Y subunit B-3 21 144 - -
Spst3g01394 219 SUPERFAMILY Histone-fold 29 151 IPR009072 GO:0046982
Spst3g01394 219 MobiDBLite consensus disorder prediction 121 147 - -
Spst3g01394 219 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g01394 Spst-Chr3 17475430 17476089 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g01394 23 129 CCAAT-HAP3 Transcription Factor Family AT4G14540 83.178 7.04e-64 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Spst3g01394 CBFD_NFYB_HMF 1.2e-26 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01394 K08065 - gmx:100810059 366.311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g01394 3 17475430 17476089 Spst3g01394 3 17475430 17476089 ECH