Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01389 ATGTTCTTCCTTTTTCTTCCAGCAGATTTTAAATTGGGGTTTGTGTTGGAGGAGGAAGCAGCAATGGCGCCCAAGCAGGGAATTCGTAAGGGTAGCAGAAACCCGGAGTTAATAAGGAGCATTGGAAAATACTCGAGATTGCAGATGTACCACAAAAGGGTGTTTATTCTTCTCGCCGGTAGATTCAAGGGAAAGAGGGAAGTGTTTTTGAAGCAGCTTCCTTCTGGATTGCTTCTTGTAACCGTTCATGCTAACTGTCCTATGTTATTGCCACGTCAAGTAGATGTTTATGCTGTTAACGTGGATAATTTTGATGACAAATACTTCTTAAAGGAGTCCCAGAAAAAGAAAAAGAAGGGAGAGGGCGAGTTTTTCATCGAGACAGTGAAGAAGGAAAAACGTGTCTTACCCAGGAGAAATGACCAGAAAAATGTGGACTCTGCGTTGATAAAATCCATTGAGAGCATTCTTGACTTGAATGCTTATTTGGGTGCCAGCTTTTCCCTAAAGGCTGGTGTGAAACCTCATGAGCTAGTCTTCTAG 543 0.4236 MFFLFLPADFKLGFVLEEEAAMAPKQGIRKGSRNPELIRSIGKYSRLQMYHKRVFILLAGRFKGKREVFLKQLPSGLLLVTVHANCPMLLPRQVDVYAVNVDNFDDKYFLKESQKKKKKGEGEFFIETVKKEKRVLPRRNDQKNVDSALIKSIESILDLNAYLGASFSLKAGVKPHELVF 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01389 180 Pfam Ribosomal protein L6e 93 180 IPR000915 GO:0003735|GO:0005840|GO:0006412
Spst3g01389 180 PANTHER 60S RIBOSOMAL PROTEIN L6 93 180 IPR000915 GO:0003735|GO:0005840|GO:0006412
Spst3g01389 180 SUPERFAMILY Translation proteins SH3-like domain 53 124 IPR008991 -
Spst3g01389 180 Pfam Ribosomal protein L6, N-terminal domain 24 55 IPR005568 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g01389 Spst-Chr3 17415218 17417138 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g01389 22 53 Cytoplasmic Ribosomal Protein Gene Family AT1G74060 65.625 3.95e-07 46.6