Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01388 ATGCACACTGAACCGAAATTAGGGTTTGTGTTGGAGGAGGAAACAGCAATGGCGCCCAAGCAGGGAACTCGTAAGGGTAGCAGAAACCCGGAGTTGATAAGGGGCATTGGAAAATACTCGAGATCGCAGATGTACCACAAGAGGGGTATTTGGGCTATCAAGGCCAAAAACGGTGGCGTTTTCCCTCGTCACGACCCTACACCGAAACCTAAAACTCCCGCTCAAAAACCTCCAAAATTTTATCCTGCGGATGATGTCAAGAAACCTCTTATCAACAAGCACAAGCCAAAACCCACTAAGCTCAGGGCTAGCGTTACCCCTGGGACAGTGCTAATTCTTCTCGCCGGCAGATTCAAGGGAAAGAGGGTAGTCTTTTTGAAGCAGCTTCCTTCTGGGTTGCTTCTTGTGACGGGACCTTTCAAGATTAATGGAGTTCCATTGAGACGTGTCAACCAGTCCTATGTCATTGCCACATCCACCAAAGTAGATGTTTCTGCGGTTAACGTGGACAGGTTTGATGACAAATACTTCTCAAAGGAGTCCCAGAAAAAGAAGAAGAAAGGAGAGGAAGAGTTTTTTGAGGCAGAGAAGAAGGAAAAACATGTCCTGCCCCAGGAGAAGAAAGAGGACCAGAAAAATGTGGACTCTGCGTTGATAAAAATCATTGAGAGCATTCCTGACTTGAATGCTTATCTAGGTGCCAGGTTTTCCCTAAAGGCTGGTGTGAAACCTCATGAGCTAGTCTTCTAG 750 0.4653 MHTEPKLGFVLEEETAMAPKQGTRKGSRNPELIRGIGKYSRSQMYHKRGIWAIKAKNGGVFPRHDPTPKPKTPAQKPPKFYPADDVKKPLINKHKPKPTKLRASVTPGTVLILLAGRFKGKRVVFLKQLPSGLLLVTGPFKINGVPLRRVNQSYVIATSTKVDVSAVNVDRFDDKYFSKESQKKKKKGEEEFFEAEKKEKHVLPQEKKEDQKNVDSALIKIIESIPDLNAYLGARFSLKAGVKPHELVF 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01388 249 Gene3D - 103 187 IPR014722 -
Spst3g01388 249 PANTHER 60S RIBOSOMAL PROTEIN L6 18 249 IPR000915 GO:0003735|GO:0005840|GO:0006412
Spst3g01388 249 MobiDBLite consensus disorder prediction 58 101 - -
Spst3g01388 249 FunFam 60S ribosomal protein L6 103 187 - -
Spst3g01388 249 CDD KOW_RPL6 97 249 IPR041997 -
Spst3g01388 249 Pfam Ribosomal protein L6e 142 249 IPR000915 GO:0003735|GO:0005840|GO:0006412
Spst3g01388 249 ProSitePatterns Ribosomal protein L6e signature. 143 161 IPR000915 GO:0003735|GO:0005840|GO:0006412
Spst3g01388 249 SUPERFAMILY Translation proteins SH3-like domain 103 189 IPR008991 -
Spst3g01388 249 Pfam Ribosomal protein L6, N-terminal domain 19 74 IPR005568 GO:0003735|GO:0005840|GO:0006412
Spst3g01388 249 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g01388 Spst-Chr3 17411218 17412720 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g01388 17 249 Cytoplasmic Ribosomal Protein Gene Family AT1G74050 76.395 2.79e-116 330
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01388 K02934 - gmx:100499766 383.259