Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01373 ATGTCAACAACTTCCCATACCATTGCTCACCACAGCTTATTTGAGGAGCAGGATCAGATTCCTACACAGATGGGGTTCTTTCCCTTTCCAACAAACCTTACCTTCCCTCCTTTGGGTTGTCACCAATCCTCTTTGAAAGCCTTCAGCTCCATAGCACCTTCTTCACTTGCTATATCTCAACAAGATTCTACATCAAATCTAACAGAAACCCTATTTCACAAGTCAAGAGAAGACCTCACTTCCACCTTTGGAGGAGCTCAATTCCTGTCCTTGCGTAGATCCAGTGTAAATCCATGGGCATTGGGAGAAGTGAGTGATTGCTTCAGCAGTAAAAGAAGTGGATTTGATGATCATCATCTGGGAATTTCAGCCATGAAGATGAAGAAAATCAAGGCAAGAAGGAAGGTGAGAGAGCCTAGGTTTTGCTTCAAGACTATGAGCGATGTGGATGTACTGGACGATGGCTACAAGTGGAGGAAGTACGGACAGAAAGTTGTGAAGAACACGCAGCACCCCAGAAGCTATTACCGTTGCACACAAGATAATTGTCGGGTAAAGAAACGCGTGGAACGCTTAGCAGAGGATCCAAGGATGGTGATAACCACATATGAAGGGAGACATGTTCATTCTCCATCAAATGATGTCGAAGACTCATCTCCATCTCAACTTGGTAACTTCTTATGGTAG 687 0.4425 MSTTSHTIAHHSLFEEQDQIPTQMGFFPFPTNLTFPPLGCHQSSLKAFSSIAPSSLAISQQDSTSNLTETLFHKSREDLTSTFGGAQFLSLRRSSVNPWALGEVSDCFSSKRSGFDDHHLGISAMKMKKIKARRKVREPRFCFKTMSDVDVLDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHVHSPSNDVEDSSPSQLGNFLW 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01373 228 SMART WRKY_cls 152 211 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst3g01373 228 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 85 212 IPR044810 GO:0003700
Spst3g01373 228 MobiDBLite consensus disorder prediction 214 228 - -
Spst3g01373 228 MobiDBLite consensus disorder prediction 208 228 - -
Spst3g01373 228 Pfam WRKY DNA -binding domain 153 209 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst3g01373 228 Gene3D WRKY domain 139 205 IPR036576 GO:0003700|GO:0006355|GO:0043565
Spst3g01373 228 ProSiteProfiles WRKY domain profile. 147 212 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst3g01373 228 FunFam WRKY transcription factor 57 138 212 - -
Spst3g01373 228 SUPERFAMILY WRKY DNA-binding domain 144 211 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g01373 Spst-Chr3 17136214 17137809 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g01373 122 228 WRKY Transcription Factor Family AT4G39410 77.876 1.47e-61 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Spst3g01373 WRKY 9.6e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01373 - - pvu:PHAVU_002G266400g 432.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g01373 3 17136214 17137809 Spst3g01373 3 17136214 17137809 ECH