Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01359 ATGGAGAGTAGGGAATACGATTACGAGTACAGGGTAGAAGAGAGGGTGAGAGTGGAAGAGGAACCGAGGAGGAAATACAGAGGAGTGAGGCAGAGGCCATGGGGGAAATGGGCTGCAGAAATAAGGGACCCGTTCAAGGCTACCAGAGTATGGTTAGGAACATTCGAGACTGCTGAGGATGCTGCCAGAGCCTATGATGAAGCTTCTTTGCGTTTCAGAGGAAACAAGGCCAAACTCAACTTCCCTGAAAATGTGAGGCTCAGACAACACCCACCACCAACAACCACCCATTTCACCGTGCCCCTTTTCTCCGTTCCGTCTACAACTGAACCAATTGTTCACACTCAGCCTCAGCCTCAGGGTTCACGTGATTCCGGCAACTTCTACGAGTATTATAATTCAAATGTTCATGAATTTCCCGTGAGCCTGTATGACCAGGTTCCTGTGTCATCATCATTCTCTGTTGGGGCTGCTCATTTTCAATCTTCACCTTCCTATTCTTCTTCCTCGACTATTCCTTCCCTTTATCCTACGCACCCACCCCCATGGTCTTCTTCTTCTGCTGCTCCTCATACTTACACCTCTTCTTCAGGATCATAA 600 0.4833 MESREYDYEYRVEERVRVEEEPRRKYRGVRQRPWGKWAAEIRDPFKATRVWLGTFETAEDAARAYDEASLRFRGNKAKLNFPENVRLRQHPPPTTTHFTVPLFSVPSTTEPIVHTQPQPQGSRDSGNFYEYYNSNVHEFPVSLYDQVPVSSSFSVGAAHFQSSPSYSSSSTIPSLYPTHPPPWSSSSAAPHTYTSSSGS 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01359 199 Pfam AP2 domain 25 74 IPR001471 GO:0003700|GO:0006355
Spst3g01359 199 Gene3D AP2/ERF domain 24 84 IPR036955 GO:0003700|GO:0006355
Spst3g01359 199 MobiDBLite consensus disorder prediction 162 199 - -
Spst3g01359 199 FunFam Ethylene-responsive transcription factor 2 24 83 - -
Spst3g01359 199 SUPERFAMILY DNA-binding domain 25 84 IPR016177 GO:0003677
Spst3g01359 199 MobiDBLite consensus disorder prediction 185 199 - -
Spst3g01359 199 ProSiteProfiles AP2/ERF domain profile. 25 82 IPR001471 GO:0003700|GO:0006355
Spst3g01359 199 PANTHER DNA-BINDING DOMAIN 20 150 IPR044808 GO:0003700|GO:0009873
Spst3g01359 199 SMART rav1_2 25 88 IPR001471 GO:0003700|GO:0006355
Spst3g01359 199 PRINTS Ethylene responsive element binding protein signature 48 64 IPR001471 GO:0003700|GO:0006355
Spst3g01359 199 PRINTS Ethylene responsive element binding protein signature 26 37 IPR001471 GO:0003700|GO:0006355
Spst3g01359 199 CDD AP2 25 84 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g01359 Spst-Chr3 17030136 17030735 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g01359 23 97 AP2-EREBP Transcription Factor Family AT2G33710 69.231 5.26e-34 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Spst3g01359 AP2 1.7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01359 - - var:108344045 253.832
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g01359 3 17030136 17030735 Spst3g01359 3 17030136 17030735 ECH
Spst3g01359 3 17030136 17030735 Spst9g01684 9 17167567 17168946 ECH