Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01352 ATGTCAAAATCTCCAGAAACTCAATACCCCCACAAAGCTTTGGGTTGGGCTGCTACTGACACTTCTGGCATCCTTTCTCCCTTTCATTTTTCCAGAAGGGAAAACGGTGATGATGACGTCACTGTCCAGATTCTCTTTTGCGGCGTTTGTCATTCTGATCTTCACACTGTGAAAAACGACTGGGGTTTCACCACTTACCCTGTCGTTCCAGGGCACGAAATTGTTGGTGTTGTAACAAAAGTTGGAAACAATGTGAAAAATTTCAAAGAAGGTGATAAAGTGGGAGTTGGTGTGATAGTGGAGTCTTGCAAGGAGTGTGAATGTTGCCAACAGGATTTGGAGAATTACTGTCCCCGCCCTGTGTTTACTTATAACTCCCCTTATTATGATGGAACACGAACCCAAGGTGGTTATTCTAACAGTGTGGTTGTTCACCAGCGTTATGTGCTCCGATTTCCAGATAACTTACCCCTTGATGCTGGTGCTCCACTGTTGTGTGCTGGAATAACTGTGTATAGCCCTATGAAATACTATGGGATGACAGAACCTGGCAAACATTTGGGAGTGGCAGGGCTAGGTGGGTTAGGCCATGTTGCAATCAAAATTGGTAAGGCCTTTGGGCTGAAAGTTACTGTCATTAGTGGATCTCCATACAAGGAAGCTGAGGCAATTGACAGACTTGGGGCTGATTCTTTCCTTGTTTCCTCAGACCCTGCAAAAATGAAGGCTGCTATGGGAACCATGGACTATATCATAGACACAATTTCTGCTGTTCACTCCTTGACATCACTGCTTAGTCTGCTGAAGCTGAATGGGAAGCTAATTACTGTAGGGTTGCCCAACAAGCCTCTTGAGGTGCCTATCTTTACATTAGTTGCAGGAAGGAAGCTTGTAGGGGGGAGCAACTTTGGAGGGATCAAGGAAACCCAGGAAATGCTTGATTTCTGCGGAAAGCACAACATAACTGCAGATATTGAGCTGATTAAGATAGACCAAATCAACACTGCCATGGAGAGGCTTAGCAAAGGTGATGTGAAATATCGCTTTGTGATTGATGTGGCCAACTCTATTTCAAGTTTGTAG 1083 0.446 MSKSPETQYPHKALGWAATDTSGILSPFHFSRRENGDDDVTVQILFCGVCHSDLHTVKNDWGFTTYPVVPGHEIVGVVTKVGNNVKNFKEGDKVGVGVIVESCKECECCQQDLENYCPRPVFTYNSPYYDGTRTQGGYSNSVVVHQRYVLRFPDNLPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAIKIGKAFGLKVTVISGSPYKEAEAIDRLGADSFLVSSDPAKMKAAMGTMDYIIDTISAVHSLTSLLSLLKLNGKLITVGLPNKPLEVPIFTLVAGRKLVGGSNFGGIKETQEMLDFCGKHNITADIELIKIDQINTAMERLSKGDVKYRFVIDVANSISSL 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01352 360 Gene3D - 167 323 - -
Spst3g01352 360 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 156 321 IPR036291 -
Spst3g01352 360 Gene3D - 16 353 - -
Spst3g01352 360 FunFam probable cinnamyl alcohol dehydrogenase 16 175 - -
Spst3g01352 360 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 71 85 IPR002328 GO:0008270|GO:0016491
Spst3g01352 360 FunFam Cinnamyl alcohol dehydrogenase 167 323 - -
Spst3g01352 360 Pfam Alcohol dehydrogenase GroES-like domain 38 150 IPR013154 -
Spst3g01352 360 PANTHER ALDEHYDE REDUCTASE 6 356 IPR047109 GO:0016616
Spst3g01352 360 SMART PKS_ER_names_mod 23 351 IPR020843 GO:0016491
Spst3g01352 360 Pfam Zinc-binding dehydrogenase 194 315 IPR013149 -
Spst3g01352 360 FunFam Putative cinnamyl alcohol dehydrogenase 6 324 353 - -
Spst3g01352 360 SUPERFAMILY GroES-like 20 185 IPR011032 -
Spst3g01352 360 CDD CAD1 15 352 IPR047109 GO:0016616
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g01352 Spst-Chr3 16977190 16980211 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g01352 11 357 Monolignol Biosynthesis Gene Families AT2G21730 72.779 0.0 522
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01352 K00083 - gmx:100819684 626.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g01352 3 16977190 16980211 Spst3g01352 3 16977190 16980211 ECH