Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01351 ATGGATTCTAAGGATTTTCGATCCATTTTGGAGAGCGCGGGTGTAGACATTTGGATGTTGATGGATGTCGCCATCGAGGTGGCGTCTGCTGACCACCGTGATGAATTGAGGCGTCGAAGAGATGGAATCGTGGAGCGCCTCTATGCGACTTCCGTGTCATCATCGCGGTGTCGAAATTGTGATGCCAACGACGTTAGAGAAAACAAGATGCAAAGCAATCCCTCTGCGGAGGAGGAAAAGGATACTGACGAAGTCTTGTTAGACGATGAACGAAAGAAGATTCTAGAGATTAAAGAACAACTTGAAGATCCTCTCCAGTCCGAAGATTCGTTGGTGGAGCTGTTGCAGAATCTAGCAGACATGGATATTACATTCCAAGCCTTAGAAGAGACTGACATTGGGAGGCTCGTGAATCGGTTCCGAAAGCATTCTTCTAATGACGTTAAGAGACTGGTGAAGTTGCTCATCAGGAAATGGAAGGAAATTATAGATGAATGGGTGAAGTTGAAGACACCGGGAGAAGGAAGTACTACTGTCATGGCTGACGAGGACTCGCCACAAGAGAAAATCATACAAAATGGGCATCGTCAGATTCCCGATTATGCAAACTCGCCAAATCCACACAATGAGAGTCTAGGGTCAGAGCACACCAACATTGAACCTCAACAACGAAAACCAAAAGCAATTCCTCGCAAAGAATCTCCCCTAAAACCATCGCCATCAGTTACTACTCCTACTCTTGCACCTCAAAACGTATTGATATGA 765 0.4562 MDSKDFRSILESAGVDIWMLMDVAIEVASADHRDELRRRRDGIVERLYATSVSSSRCRNCDANDVRENKMQSNPSAEEEKDTDEVLLDDERKKILEIKEQLEDPLQSEDSLVELLQNLADMDITFQALEETDIGRLVNRFRKHSSNDVKRLVKLLIRKWKEIIDEWVKLKTPGEGSTTVMADEDSPQEKIIQNGHRQIPDYANSPNPHNESLGSEHTNIEPQQRKPKAIPRKESPLKPSPSVTTPTLAPQNVLI 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01351 254 Pfam TFIIS helical bundle-like domain 114 163 IPR017923 -
Spst3g01351 254 Coils Coil 111 131 - -
Spst3g01351 254 ProSiteProfiles TFIIS N-terminal domain profile. 89 166 IPR017923 -
Spst3g01351 254 MobiDBLite consensus disorder prediction 197 219 - -
Spst3g01351 254 SMART TFS2_5 94 165 IPR003617 GO:0005634
Spst3g01351 254 MobiDBLite consensus disorder prediction 237 254 - -
Spst3g01351 254 CDD TFIIS_I 92 164 - -
Spst3g01351 254 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 244 IPR044790 -
Spst3g01351 254 MobiDBLite consensus disorder prediction 197 254 - -
Spst3g01351 254 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 87 176 IPR035441 -
Spst3g01351 254 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 92 175 IPR035441 -
Spst3g01351 254 MobiDBLite consensus disorder prediction 64 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g01351 Spst-Chr3 16931033 16932422 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Spst3g01351 Med26 3.3e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01351 - - gmx:100796457 380.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g01351 3 16931033 16932422 Spst3g01351 3 16931033 16932422 ECH
Spst9g01691 9 17298266 17300150 Spst3g01351 3 16931033 16932422 ECH
Spst3g01351 3 16931033 16932422 Spst9g01691 9 17298266 17300150 PCT