Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01342 ATGTCTGCCATGAACTCTAGTGTCTTGGCCTGTAACTATGCCAGATCAGGATGCTCCGACCTTAATGCCAAGCTTTCTTCCATGCCTTCGGTTGCATCTCCACCAGTGTCTGGTCTCAAGTTGCCCATCATCAAGGCTCAGCAAGCAAAAGTTACTGAATCTAAATCAAGCGAAGGAAGGAGAAGTTCCCTTGTTTACTTAGCAGCTACCCTTTTCACTGCTGCAGCTGCTGCTTCCAACTCTCCTGCCAATGCTGGAATCATTGAAGAATACCTTGAAAAGAGCAAGGCCAACAAGGAACTGAATGACAAGAAAAGGTTAACTACAACTGGGGCCAATTTTGCAAGAGCATACACTGTGGAATTTGGCACTTGCAAATTCCCAGAAAACTTCACTGGTTGCCAAGATCTTGCTAAGCAAAAGAAAGTGCCTTTTCTTTCTGATGATTTGGATATAGAATGTGAAGGAAAGGACAAATACAAATGTGGTTCTAATGTTTTCTGGAAATGGTGA 513 0.4327 MSAMNSSVLACNYARSGCSDLNAKLSSMPSVASPPVSGLKLPIIKAQQAKVTESKSSEGRRSSLVYLAATLFTAAAAASNSPANAGIIEEYLEKSKANKELNDKKRLTTTGANFARAYTVEFGTCKFPENFTGCQDLAKQKKVPFLSDDLDIECEGKDKYKCGSNVFWKW 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01342 170 PANTHER PHOTOSYSTEM I REACTION CENTER SUBUNIT N, CHLOROPLASTIC 1 170 IPR008796 GO:0009522|GO:0015979
Spst3g01342 170 Pfam Photosystem I reaction centre subunit N (PSAN or PSI-N) 42 170 IPR008796 GO:0009522|GO:0015979
Spst3g01342 170 Gene3D - 86 170 IPR044907 -
Spst3g01342 170 FunFam Photosystem I reaction center subunit N 86 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g01342 Spst-Chr3 16864419 16865219 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g01342 1 141 Calmodulin-binding Proteins AT5G64040 60.417 1.57e-54 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01342 K02701 - cave:132166062 262.307