Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01341 ATGTATGCTTCAACTTCCTTTACTTCACAATTGGTCCATGACCTTCTCATGGGCTCAAGCTCAAGAAAGCTACTACTTCAAGACCCACTTCACCAATCAATCAACTCAGCTGACCGAGCCAACTCCCCAGATTCCATGGCTTACAACTCAACAGATTCGTATTTCAAAGGTCGTGACTTCGATGCAAATGTTGTCATGATACTCTCAGTCCTATTGTGTGCTGTTATTTGCTCACTCGGCTTGAACTCCATCATAAAGTGTGTCTTAAGGTGCTCAAACATAGTCATCACCGACTCTTCAAGTGGGAGCTACAACCCTTCACCAAGATTGGCCAACACAGGAATCAAGAAGAAAGCCCTCAAGACTTTTCCTACTGTGAGCTACTCAACAGAGTTGAAATACCCAGGTTTGGACACAGAGTGTGTGATATGCCTCCTTGACTTTGACAATGGTGATAAGGTTCGCATTTTGCCAAAATGCAACCACGGTTTCCACGTTCGTTGCATTGACAAATGGTTAAGTTCACACTCATCATGCCCCAAGTGCAGACAGTGCCTCATTGAGACTTGTAAGAAAATTGTTGGATCCCAACCACCAGTGCCAGAAACCATTATAAGGATCCAACCACTTGAACCTGAAGGTTTGGAGCGTAACTATAGGGAAGTATGCTAG 672 0.442 MYASTSFTSQLVHDLLMGSSSRKLLLQDPLHQSINSADRANSPDSMAYNSTDSYFKGRDFDANVVMILSVLLCAVICSLGLNSIIKCVLRCSNIVITDSSSGSYNPSPRLANTGIKKKALKTFPTVSYSTELKYPGLDTECVICLLDFDNGDKVRILPKCNHGFHVRCIDKWLSSHSSCPKCRQCLIETCKKIVGSQPPVPETIIRIQPLEPEGLERNYREVC 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01341 223 CDD RING-H2_EL5-like 140 183 - -
Spst3g01341 223 ProSiteProfiles Zinc finger RING-type profile. 141 183 IPR001841 -
Spst3g01341 223 PANTHER RING-H2 FINGER PROTEIN ATL78 19 214 IPR044602 GO:0016567|GO:0016740
Spst3g01341 223 Pfam Ring finger domain 140 183 IPR001841 -
Spst3g01341 223 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 104 187 IPR013083 -
Spst3g01341 223 SMART ring_2 141 182 IPR001841 -
Spst3g01341 223 FunFam RING-H2 finger protein ATL73 103 188 - -
Spst3g01341 223 SUPERFAMILY RING/U-box 119 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g01341 Spst-Chr3 16857986 16858657 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g01341 60 187 C3H Transcription Factor Family AT3G10910 52.206 1.82e-42 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01341 K19040 - gmx:100527126 393.275
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g01341 3 16857986 16858657 Spst9g01746 9 19328106 19328783 PCT