Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01339 ATGGATTATGAGCAATTTGATTACTCATTTGGCTCTCCTTACATGAACCAACTCCATGAGTGTTGCTTCGAAAATGCATTTCCATTTCAAACAGAAGATATCTTAACACCAAATATCATCCTGGATGAAATATTTGATCAAGATTCCATGGAGGACTTGCTGCTGGAAGATACTAACAACCAGGACATTGGTTTCCTGAATCATAATGATCCACCGGAGACTGAATTTTGTCATGGATTTGCCCCTAGTCCCGAGGAAAATGTGCATGATTCAGTGGAAGAAGGAGATTCTTATTTGAAGGAAATCCAAGCAGAGCTAATGGAAGAGACTAGTTTAGTTGATCTCTTGTTAACAGGAGCTGAAGCTGTTGAAGCACACAACTGGGCCCTTGCTTCAGATATAATTGAAAAACTAAATAATGCCTCATCTTTACGAAATGGTGATGGTTTGTTGAACAGGTTGGTTTTTTTCTTTACTCAGGGTCTGTATTATAAAAGTACAAATGCCCCAGAGTTGTTGCAGCATAGTGCTGTTTCTACACACACGAATGCTTTCTGTGTGTTTCAGGTTCTCCAAGAACTCTCTCCCTATGTGAAATTTGCTCATTTCACAGCAAACCAAGCAATCTTAGAAGCCACAGAAGGTGTTGAGAATGTTCACATCATTGATTTTGATATCATGGAGGGGATTCAGTGGCCACCCTTGATGGTTGACTTTGCAATGAGGAAAGGTACTACTTCCCTTAGAATAACAGCCATCACAGTGGACCAGAGAGGTACCGCTTCTGCTCAACAAACAGGAAGACGGCTCAAAGAGTTTGCAGCTTCTATCAACTTTCCATTCATGTTTGATCAGATAACGATGGCAAGAGAAGAAGATTTTCAAGGAATTGAACTTGGTCAAACACTGATAGTCAACTGTATGATGCACCAGTGGATGCCTAATAGAAGCTTCTCATTGGTCAAAACTTTCTTGGATGGTGTGACCAAATTGTCCCCGAGGCTTGTGGTCTTAGTGGAAGAAGAATTGTTTAATTTCCCTAGGCTCAAGTCCATGTCCTTTGTGGAGTTCTTCTGTGAGGCTTTGCATCACTACACTGCACTTTGTGATTCACTTTCTAGTAGTCTATCGGGTAGCCACAAGATGGGGTTGAGCATGATAGAGAAAGAGATTCTGGGGCTCAGAATCTTGGACAGTGTGAGGCAGTTTCCTTGTGAGAGAAAGGAGAGAAAGGTGTGGGAGGAAGGGTTTTATTCCTTGAAAGGGTTCAAACGTGTTCCTATGAGTACATGTAATATGTCACAAGCCAAGTTCTTGGTAAGCCTCTTTGGTGGAGGGTATTGGGTCCAATTCGAGAAGGGTAGGTTGGCCTTGTGTTGGAAATCAAGGCCTTTGACTGTGGCTTCAATCTGGTTACCAATGGCTTATTCGACTGACAAAGCCAAATAG 1449 0.4196 MDYEQFDYSFGSPYMNQLHECCFENAFPFQTEDILTPNIILDEIFDQDSMEDLLLEDTNNQDIGFLNHNDPPETEFCHGFAPSPEENVHDSVEEGDSYLKEIQAELMEETSLVDLLLTGAEAVEAHNWALASDIIEKLNNASSLRNGDGLLNRLVFFFTQGLYYKSTNAPELLQHSAVSTHTNAFCVFQVLQELSPYVKFAHFTANQAILEATEGVENVHIIDFDIMEGIQWPPLMVDFAMRKGTTSLRITAITVDQRGTASAQQTGRRLKEFAASINFPFMFDQITMAREEDFQGIELGQTLIVNCMMHQWMPNRSFSLVKTFLDGVTKLSPRLVVLVEEELFNFPRLKSMSFVEFFCEALHHYTALCDSLSSSLSGSHKMGLSMIEKEILGLRILDSVRQFPCERKERKVWEEGFYSLKGFKRVPMSTCNMSQAKFLVSLFGGGYWVQFEKGRLALCWKSRPLTVASIWLPMAYSTDKAK 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01339 482 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 104 467 IPR005202 -
Spst3g01339 482 Pfam GRAS domain family 112 471 IPR005202 -
Spst3g01339 482 ProSiteProfiles GRAS family profile. 103 472 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g01339 Spst-Chr3 16805473 16806921 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g01339 186 471 GRAS Transcription Factor Family AT1G55580 36.538 5.64e-45 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Spst3g01339 GRAS 1.9e-80 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01339 - - gmx:100804613 829.706
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g01339 3 16805473 16806921 Spst3g01339 3 16805473 16806921 ECH