Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01332 ATGGTTAGAGACGATCTATACATCACCGTTCCAAGTTTCTTCCGCTGCCCCATATCCCTCGACGTCATGAAATCCCCTGTCAGCCTCTCCACCGGCGTTACCTACGACCGCGCCAGCATCCAACGCTGGCTCGACAACGGCAACAACACCTGTCCCGCCACCATGCAGGTTCTCCAAACCAAGGAATTCGTTCCTAACCGAACCTTACAGAGGCTCATCCAGATCTGGTCTGACTCGCTTCACCACCAACTCCACTCGCCTCCCTCCCCTACCTCCACTCTCCCCTCCAAGGACCAAATCCTCGTCGCTATCTCCGAATTGCAGACTCGCGCCGACAACCGCTTCGACTCGCTCGCGAAAATCGCGCGGTTCGCGCAGGAGTCCGAGGAGAACCGCGATTTTCTCGTCAGAACGGAATGCTTCGTGCCGCTGCTGGTTGGCTTCCTCGACAATGTCAATGGCGGCGTCGAGTTCCTCGAACAGGTTGTTACGGCGTTGGATTTGGTTATCGGCAAAATGGAAGATCGGGAGGGGCTGAAAAACTTGATACTGAAGAGGCCGGGCGAGGGAGATAAACAGAGCGTGGATTCTCTGCTTCTCGTTCTGCAACAAGGAAGCCAGGCCGCACAAATCGCATCGGCTAGGGTTTTGAAATCCGTCGCGGTGGACGTTGAATCGAAGCTGTTGATAGCGGAGAAGGAAGGCTTAGTGTCCGAATTGCTGAAACTAATCACGCCGGAGAAAGATCCGGATCTAGTTGAGAACTGTTTGTCGTTCCTGGTCGCGATTTCGTCTCCGAGACGGAGCAAGATGAAGCTGGTGCGTCTTGGAGCGGTTAAGGTGTTATCGAAGCTCCTTTCGGCTTCGAACATGAGTGTGTCCGTGACGGAGAAGGTTCTGAAGTTGGTGGAAACGGTGTCGTCTACGAATGAAGGGAGGTCGGAGATATGCGAGGATTCAGCGTGCGTGGCGGCGATAGTGAACAAGGTGCTGAAAGTGTCGAGCGTGGCAACGGAACACGCCGTTACGACGCTTTGGAGCGTTTGTTATCTGTTTCGGGATCAAACGGCGCAAGAAGCCGTTACGAAGGCTAACGGCTTGACCAAGATTCTGCTTCTGATGCAGAGTAATTGCTCGCCGCAAGTTCGCCAAATGTCTGCGGATTTGCTCAAGATATTTCGGGTTAATTCTAAGTCGTGTCTTTCATCTTATGACACCAAAACCACTCATATTATGCCCTTTTGA 1245 0.5309 MVRDDLYITVPSFFRCPISLDVMKSPVSLSTGVTYDRASIQRWLDNGNNTCPATMQVLQTKEFVPNRTLQRLIQIWSDSLHHQLHSPPSPTSTLPSKDQILVAISELQTRADNRFDSLAKIARFAQESEENRDFLVRTECFVPLLVGFLDNVNGGVEFLEQVVTALDLVIGKMEDREGLKNLILKRPGEGDKQSVDSLLLVLQQGSQAAQIASARVLKSVAVDVESKLLIAEKEGLVSELLKLITPEKDPDLVENCLSFLVAISSPRRSKMKLVRLGAVKVLSKLLSASNMSVSVTEKVLKLVETVSSTNEGRSEICEDSACVAAIVNKVLKVSSVATEHAVTTLWSVCYLFRDQTAQEAVTKANGLTKILLLMQSNCSPQVRQMSADLLKIFRVNSKSCLSSYDTKTTHIMPF 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01332 414 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 106 IPR013083 -
Spst3g01332 414 SUPERFAMILY RING/U-box 5 79 - -
Spst3g01332 414 PANTHER WDSAM1 PROTEIN 9 402 IPR045185 GO:0061630
Spst3g01332 414 FunFam RING-type E3 ubiquitin transferase 2 82 - -
Spst3g01332 414 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 277 321 IPR000225 GO:0005515
Spst3g01332 414 Gene3D - 107 403 IPR011989 -
Spst3g01332 414 SMART Ubox_2 13 76 IPR003613 GO:0004842|GO:0016567
Spst3g01332 414 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842|GO:0016567
Spst3g01332 414 CDD RING-Ubox_PUB 11 63 IPR045210 -
Spst3g01332 414 Pfam U-box domain 10 77 IPR003613 GO:0004842|GO:0016567
Spst3g01332 414 SUPERFAMILY ARM repeat 114 394 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g01332 Spst-Chr3 16743284 16744528 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g01332 1 414 U-box Gene Family AT5G09800 55.131 1.63e-148 426
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01332 - - vra:106764800 699.893
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g01332 3 16743284 16744528 Spst3g01332 3 16743284 16744528 ECH
Spst9g01753 9 19377554 19378795 Spst3g01332 3 16743284 16744528 ECH
Spst3g01332 3 16743284 16744528 Spst9g01753 9 19377554 19378795 PCT