Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01329 ATGCTGGGCTCTGATGATGGAGATATTGATGTGTTCTTTGACTCAGTGGATAGTTTGTCAGCTCCAGATTCTGTTTTAGCCAAAGAAGAGTTTATTTCTGAAAGGTACGGTTGTGATTATGGTGAAATTTGGGTGAAGGAGCCTCTTAGTGTGAAGGAGAGAAGGGAACGTTTTCTGCAGAATTTGGGTTTAGACGATGCTTCTTCATCTAAGGTTTGTTATCAAGAAAAAATGAACTTTGATGACTCATCCATCAGTTTGGGATTTGAGAGGATCAGGGAGTGCAGTGGAGCAATTTCAAATGCTTCAATTTCGCATGCCGATCAAGTATCTGAGAATTTGGTTCTCTCTGGAGGTAAATCAGCTTCTGAAGCAAAAGTCTCATTGGATGAAGTGAAAGGGTGTCCCCAAGGTGAAGCAGATGCAAACTTTGAAAGAAAAGTGCATGACTTCACTTTTACAAATCAGGAGCACAGAGACGCTGATTCGCAAGAATTTCAGGAGTTTGACATGGGTAAAAGGAAAAGGAAAAACTGGTGGAAACGCTTTGTGGACATGAGGAAATGTGGTGAAGGAAATGTTAAATCAAAATTGAATGCAGGGGCAAATAAAACTCGAAGAATAAAGGTAAGGCAGAATAAAAAGAGGTGGCTAGAGTTCAGTGGCCTATACATTGGACAAGAGGTTAGAGCACACAAAGGTCTAATATGGACCATTAAATTTAGTCCCTGTGGTCAGTATTTAGCGAGTGGAGGTGAAGATGGTGTTGTTCGCACATGGCGTGTTACATCACTGGATAAATCCAGTATTTGTTACACCTCAAAAGATAGCACTTCTAATAGCAAAGTGGAGTGTGAAAACTCTTCTCCTAACAAGAAACACTCATGCCAACCCTTTATTTTCCTTCCAAATAGTATTTTTCAAATCGAGGAATCACCACTGCAAGAATTCTTTGGTCATTCCAGTGACGTCTTGGATTTGGCTTGGTCTAATTCAGATATTCTCCTTTCATCTTCTATGGATAAAACTGTTCGCTTGTGGCAAATTGGTTGTAATCAATGTCTAAGTGTTTTCCATCACAATGACTATGTGACATGCATTCAGTTCAACCCTGTTGATGAAAATTGCTTCATTAGTGGGTCCATTGATGGTAAAGTTCGAATATGGGGGATACGTGAAGAGCGAGTCATTGACTGGGCAGATATACGAGATGTCATAAGCGCTATAAGTTACCAGCAAGATGGGAAAGGATTTGTAGTTGGTTCTGTTACAGGCACTTGTCGTTTTTATGTTGCTTCAGGAAAATATTTCCAGCTTGAGGCGCAGATAGATGTACATGGTAAGAAGAAAGCATCAGGCAACAAGATTACTGGCATTCAGTTCTCCCAAAAAAATGTTCAGAGAATTATGATCACAACAGAAGATTCCAAAATTCATATTTATGATGGCATTGAGCTTGTTCAGAAATACAAAGGTCTTCCAAAGTCTGGAAGTCAAATGTCTGGTTCATTTACATCAAGTGGAAAACATATAATTTCAGTTGGAGAGGACTCCCATGTTTACATTTGGAACTTGGATGACTTGGAAAACCCTTCTTCTAGACACACAAAATCTGAACGCTCCTGTGAGTACTTCTTTTCCAAGGGTGTTACTGTTGCAGTACCTTGGTCAGGTGTGAAAGTAGATCAAAGGGATTCTAGCAGTAACTTTTCCCACCATTCTTCAGAAATGCAAACCCAATTAGATCTTGCTCCTGGGATTAGAGATTCAGAACGTTTTTCTCTTGGAAACTGGTTTGCCATTGATGGCACATGCCGAGGTTCTATGACTTGGCCTGAGGAGAAACTTCCTAGCTGGGATTTACCTATAGCGGAAGATGAATATGATCAGCACCAGTTATGTCACAAAGATAGACTTGTATCAGAAACATGGGGGCTATCAATTGTGGTGGCTGGTTGTGATGGAACTATGAAGACATTCCACAACTTTGGGTTGCCCATTAGGCTTTAA 2010 0.403 MLGSDDGDIDVFFDSVDSLSAPDSVLAKEEFISERYGCDYGEIWVKEPLSVKERRERFLQNLGLDDASSSKVCYQEKMNFDDSSISLGFERIRECSGAISNASISHADQVSENLVLSGGKSASEAKVSLDEVKGCPQGEADANFERKVHDFTFTNQEHRDADSQEFQEFDMGKRKRKNWWKRFVDMRKCGEGNVKSKLNAGANKTRRIKVRQNKKRWLEFSGLYIGQEVRAHKGLIWTIKFSPCGQYLASGGEDGVVRTWRVTSLDKSSICYTSKDSTSNSKVECENSSPNKKHSCQPFIFLPNSIFQIEESPLQEFFGHSSDVLDLAWSNSDILLSSSMDKTVRLWQIGCNQCLSVFHHNDYVTCIQFNPVDENCFISGSIDGKVRIWGIREERVIDWADIRDVISAISYQQDGKGFVVGSVTGTCRFYVASGKYFQLEAQIDVHGKKKASGNKITGIQFSQKNVQRIMITTEDSKIHIYDGIELVQKYKGLPKSGSQMSGSFTSSGKHIISVGEDSHVYIWNLDDLENPSSRHTKSERSCEYFFSKGVTVAVPWSGVKVDQRDSSSNFSHHSSEMQTQLDLAPGIRDSERFSLGNWFAIDGTCRGSMTWPEEKLPSWDLPIAEDEYDQHQLCHKDRLVSETWGLSIVVAGCDGTMKTFHNFGLPIRL 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01329 669 Gene3D - 309 557 IPR015943 GO:0005515
Spst3g01329 669 ProSiteProfiles Trp-Asp (WD) repeats profile. 229 270 IPR001680 GO:0005515
Spst3g01329 669 ProSiteProfiles Trp-Asp (WD) repeats profile. 357 399 IPR001680 GO:0005515
Spst3g01329 669 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 229 264 - -
Spst3g01329 669 SUPERFAMILY WD40 repeat-like 225 527 IPR036322 GO:0005515
Spst3g01329 669 ProSiteProfiles Trp-Asp (WD) repeats profile. 503 533 IPR001680 GO:0005515
Spst3g01329 669 Pfam WD domain, G-beta repeat 228 260 IPR001680 GO:0005515
Spst3g01329 669 Pfam WD domain, G-beta repeat 312 347 IPR001680 GO:0005515
Spst3g01329 669 Pfam WD domain, G-beta repeat 353 389 IPR001680 GO:0005515
Spst3g01329 669 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 357 392 - -
Spst3g01329 669 PRINTS G protein beta WD-40 repeat signature 335 349 IPR020472 -
Spst3g01329 669 PRINTS G protein beta WD-40 repeat signature 248 262 IPR020472 -
Spst3g01329 669 PRINTS G protein beta WD-40 repeat signature 377 391 IPR020472 -
Spst3g01329 669 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 317 349 - -
Spst3g01329 669 SMART WD40_4 310 348 IPR001680 GO:0005515
Spst3g01329 669 SMART WD40_4 222 261 IPR001680 GO:0005515
Spst3g01329 669 SMART WD40_4 351 390 IPR001680 GO:0005515
Spst3g01329 669 SMART WD40_4 483 524 IPR001680 GO:0005515
Spst3g01329 669 SMART WD40_4 442 482 IPR001680 GO:0005515
Spst3g01329 669 SMART WD40_4 392 431 IPR001680 GO:0005515
Spst3g01329 669 ProSiteProfiles Trp-Asp (WD) repeats profile. 317 357 IPR001680 GO:0005515
Spst3g01329 669 Gene3D - 220 308 IPR015943 GO:0005515
Spst3g01329 669 PANTHER WD REPEAT DOMAIN 44 8 666 IPR040324 -
Spst3g01329 669 FunFam WD repeat-containing protein 44 213 556 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g01329 Spst-Chr3 16717033 16720511 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01329 K20241 - gmx:100819135 1125.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g01329 3 16717033 16720511 Spst3g01329 3 16717033 16720511 ECH
Spst3g01329 3 16717033 16720511 Spst9g01754 9 19397052 19403070 PCT