Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01324 ATGGATTATCTCTTCTTTCTCTTTCTCTCCCTTGTCCTAACCCTCTCCTCCGCCGCGCACCCAAAAACCCCCCGCGCCGCCCCCACCAAAACCGTCACGCCTGAGATCCAACAAGCCTGCGCGGCCACGCGCTTCCCGCAGCAATGCGAGACCTCTCTCTCCCAATACGGCAAACTCCCGTCTAACCCGACCTCTCTCCAGTTCATCCAGTCTGCCATCGCGGTCTACTCCGAAAACCTCTCCACCGCGCAGTCCATGGTGAAGTCCCTCCTCGACGCCGCCTCCGAAAGCCGCAACCTCACCGTGGCCGCCTCCACCTGCATCGAACTGTTGGACAACTCGAAGCGCCGGACTTCCCTCGCCACCGACGCGCTGCCACGAAGGAAAATCAAGGACGTGCGCGCGTGGCTGGGCGCCGCGCTCGCTTACCAGTACGACTGCTGGAACAGCCTTAAATACGCGAACGTGTCCGTGGCGGTCAGCAAAGCAATGGCTTTCATCGACTCCCTGGAATCTCTCTCCAGCAACGCCCTCAGCATGGCCTTCTCCCTCGACGCCTACGGAGACGATACCGCTTCGTGGAAGCCTCCCGCCACCGAGCGGAACGGTTTCTGGGGGAACATCGGCTCCGCCGAATCCGGCCCCGTCGGAGGAGTTCCGCCCAATTTGAAGCCCGACGTCACGGTCTGTCAGGGGGGAGGAGACGGCTGTTATAAGACAATACAAGAGGCCGTTAACGCCGCACCAGATAACGGCGACGGGACGAAGAGGTTTGTGATACTCATAAAAGAAGGAGTTTACAAGGAGACCGTTAGAGTTCCGTTAGCGAAGAGGAATGTGGTGTTCTTGGGTGACGGCATTGGCAAGACGGTCATAACCGGTGATGCTAACGTGGGGCAACCACCCATGACAACTTACAACTCTGCCACAGTTGCGGTTCTTGGAGATGGATTCATGGCAAAGGATCTGACGATTGAGAACACGGCTGGTCCTGACGCACACCAAGCAGTGGCATTCAGATCAGACAGTGATCTTTCTGTGATTGAGAACTGCGAATTCTTGGGCAACCAAGACACTCTCTATGCTCACTCCCTGCGCCAGCTCTACAAGTCATGCCGCATTGAGGGCAACGTGGACTTCATCTTTGGAAATGCTGCTTCAATTTTCCAAGACTGCCTCATACTGGTTCGTCCCAGGCAACTGCATCCAGAGAAGGGCGAGAACAATGCTATCACTGCACATGGCAGAACAGACCCTACACAACCCACGGGCTTCGTTTTCCAGAACTGTGTCATCAATGGCACGGAAGAGTACATGGCTTTGTATCACAGCAATCCTAAAGTGCACAAGAACTATTTGGGTAGACCTTGGAAAGAGTATTCTAGAACGGTTTTCATCAATTCAGTGTTGGAGGTCCTTTTGACGCCCAAGGGTTGGATGCCATGGAAGGGTGACTTTGGCCTCAAGACACTATACTATGGAGAGTTTGGGAACAAGGGACCAGGTTCTGATTTGTCGCAGAGGGTACCCTGGAGTAGCAAGATCCCTGAAGAGTACGTCGTAGCGTATTCAGTGCAGAATTTCATTCAGGGAAACGATTGGATTCCGTCGTCATCATCTGTTGGTATCCCATCGTCGTCGTAA 1644 0.5456 MDYLFFLFLSLVLTLSSAAHPKTPRAAPTKTVTPEIQQACAATRFPQQCETSLSQYGKLPSNPTSLQFIQSAIAVYSENLSTAQSMVKSLLDAASESRNLTVAASTCIELLDNSKRRTSLATDALPRRKIKDVRAWLGAALAYQYDCWNSLKYANVSVAVSKAMAFIDSLESLSSNALSMAFSLDAYGDDTASWKPPATERNGFWGNIGSAESGPVGGVPPNLKPDVTVCQGGGDGCYKTIQEAVNAAPDNGDGTKRFVILIKEGVYKETVRVPLAKRNVVFLGDGIGKTVITGDANVGQPPMTTYNSATVAVLGDGFMAKDLTIENTAGPDAHQAVAFRSDSDLSVIENCEFLGNQDTLYAHSLRQLYKSCRIEGNVDFIFGNAASIFQDCLILVRPRQLHPEKGENNAITAHGRTDPTQPTGFVFQNCVINGTEEYMALYHSNPKVHKNYLGRPWKEYSRTVFINSVLEVLLTPKGWMPWKGDFGLKTLYYGEFGNKGPGSDLSQRVPWSSKIPEEYVVAYSVQNFIQGNDWIPSSSSVGIPSSS 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01324 547 SMART PMEI_2 31 180 IPR006501 GO:0004857
Spst3g01324 547 SUPERFAMILY Pectin lyase-like 224 537 IPR011050 -
Spst3g01324 547 CDD PMEI-like_3 39 180 - -
Spst3g01324 547 Pfam Plant invertase/pectin methylesterase inhibitor 36 180 IPR006501 GO:0004857
Spst3g01324 547 PANTHER PECTINESTERASE 14 536 - -
Spst3g01324 547 Gene3D - 221 542 IPR012334 -
Spst3g01324 547 Gene3D Invertase/pectin methylesterase inhibitor family protein 33 185 IPR035513 -
Spst3g01324 547 FunFam Pectinesterase 221 545 - -
Spst3g01324 547 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 35 180 IPR035513 -
Spst3g01324 547 FunFam Probable pectinesterase/pectinesterase inhibitor 51 34 183 - -
Spst3g01324 547 Pfam Pectinesterase 226 532 IPR000070 GO:0030599|GO:0042545
Spst3g01324 547 NCBIfam pectinesterase inhibitor domain 9 179 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g01324 Spst-Chr3 16684749 16686654 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g01324 28 539 Carbohydrate Esterase AT5G09760 61.509 0.0 671
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01324 - - gmx:100819675 870.922