Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01322 ATGGCGGTGTGCTTATTTATAGAAAAACGGGTTCAAGCATACTTTTCTCAAGATCAGATAAAAAAGGTTGACATTCGCAGAGGTTTATATAAGGATGATATTATGAATAAAGATTACAGAGTTTCAGATGCACAGAACACTGATAACATGAAAATGTCTCCTACGCATGAGGATTGCAAAAATAAGTACAGTCAATCCCCAAAAACTGGTTGCAGCAGTGTCAGAAGTAGGAGCCGAAGCAGAAGCAGGAGCAAGAGCCCTCCGCGTAGTTTTCGGTGTGATTCAAAACTCAATCATGGAAATGGGATGAGGGCTAGGGGATTAACACTAGCATGTAGAGATTTTGCTTCTGGGATGTGCAGAAGAGGCAGTCAATGTCGTTTCCTTCACAGTGACAATCAAAAGTTTGATGACAGCTGGGTAAGTAGACAGAGGCAAGATGGATATCTCATATATTATGCTCCCCTTGAGAGTGCGAACAATTCTCGTACAACTGGAAGATTTAATGGAACTTGTATCAATTATGCAAAAGGAAGTTGTAGAATGGGAGCATCATGCAAGTATGTGCATCATGAAAATTCTAACCAGTTCAATAAAGCTTCTGTGGTTGAATCAACTAGGGAAATGGAAATTGATAGAAGTTGCATAACGAGTTCTTTAGAGCAAGGTGGTCGACGTGGTACAAACCAGAGTAGTGATAATCCTTGCAAATTTTTTGCATTTGGGAATTGTCGAAATGGTAACTATTGTAGATTTTCTCATGATAGGCAAGCATGCTGGAGCCCAGATAGAGGAGTCAGTGGTGGAGATCAGGCTTTGGATAGGCCAAAATTGAGTGATGAAGTTGGTCTCCATGGAAGGCTAATGAATGATAAATGGGATTTGGATAGTAATATGGCTGATGTAGATAACAAAAATGGAGTTATGGGTGGCCCAGAAACTGCTATTACTGCTTGTTCATTTGGTGATGGATGGGGCCGTAACTTAGATAAGAATAAAGTGCATGGTAAAACACTATTTTCAAGTGATATGAAGGAAGCCAACATTCACACTTCTCAGTCAGTAGGCAAAGATATTTGGCCTGATAATGAAAAAATGTCTCCTGATTGGAATCATGCCGTGAGACCTTCCATCCATATTGAAGAAAAGCATGAGCAGAGTAAGCAACAAGTTGCTCCAGGTAATCCCGTGCTTGATGTTCCACTTATTATGCATCCTTGTCCGTAG 1227 0.4042 MAVCLFIEKRVQAYFSQDQIKKVDIRRGLYKDDIMNKDYRVSDAQNTDNMKMSPTHEDCKNKYSQSPKTGCSSVRSRSRSRSRSKSPPRSFRCDSKLNHGNGMRARGLTLACRDFASGMCRRGSQCRFLHSDNQKFDDSWVSRQRQDGYLIYYAPLESANNSRTTGRFNGTCINYAKGSCRMGASCKYVHHENSNQFNKASVVESTREMEIDRSCITSSLEQGGRRGTNQSSDNPCKFFAFGNCRNGNYCRFSHDRQACWSPDRGVSGGDQALDRPKLSDEVGLHGRLMNDKWDLDSNMADVDNKNGVMGGPETAITACSFGDGWGRNLDKNKVHGKTLFSSDMKEANIHTSQSVGKDIWPDNEKMSPDWNHAVRPSIHIEEKHEQSKQQVAPGNPVLDVPLIMHPCP 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01322 408 Pfam CCCH-type zinc finger 235 255 IPR041367 -
Spst3g01322 408 ProSiteProfiles Zinc finger C3H1-type profile. 111 133 IPR000571 GO:0046872
Spst3g01322 408 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 26 389 - -
Spst3g01322 408 SMART c3hfinal6 232 256 IPR000571 GO:0046872
Spst3g01322 408 SMART c3hfinal6 167 192 IPR000571 GO:0046872
Spst3g01322 408 SMART c3hfinal6 106 132 IPR000571 GO:0046872
Spst3g01322 408 SUPERFAMILY CCCH zinc finger 232 255 IPR036855 GO:0046872
Spst3g01322 408 Gene3D - 105 205 - -
Spst3g01322 408 MobiDBLite consensus disorder prediction 41 98 - -
Spst3g01322 408 ProSiteProfiles Zinc finger C3H1-type profile. 230 257 IPR000571 GO:0046872
Spst3g01322 408 ProSiteProfiles Zinc finger C3H1-type profile. 171 193 IPR000571 GO:0046872
Spst3g01322 408 Pfam RNA-binding, Nab2-type zinc finger 172 190 - -
Spst3g01322 408 Gene3D - 225 310 - -
Spst3g01322 408 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 111 131 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g01322 Spst-Chr3 16669846 16680620 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Spst3g01322 zf-CCCH 3.7e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01322 - K22909 vra:106759211 394.43