Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01320 ATGGACACCAACCAGAACACCACCACTAGTGCATTCACAAATGCGAACAGCACTTGGAATCTTGAAAAGATGGAAACAAATGAACAACAACAACAACATCATGACCATATTATTCTCCAAGTCCAAGACCCTCTGGGTTCGGGGATTTGGCCCAACAACTACCCCCACAACCACAACCTTAACCTTCTTCAAATGCATCAAACACCCCCCACAACAACCTCGTCCATCGTAGCACCACCCTCTTCCTCGGGGTTCCTTGGAGACATACTAGGTGTTCACAACATGGATGAAGATGAAGAGCCAGAAGAAGAGCTAGGAGCCATGAAGGAGATGATGTACAAGATCGCTGCTATGCAACCCGTGGACATCGACCCCGCCACCATCCGAAAACCAAAGAGAAGAAACGTTCGCATCAGCGACGACCCTCAGAGCGTGGCTGCTCGCCACAGGAGAGAGAGGATCAGCGAGAAAATCCGCATCCTCCAAAGACTCGTTCCCGGGGGAACCAAAATGGACACTGCTTCAATGCTTGACGAAGCCATTCGCTATGTTAAGTTCCTCAAGAGACAAATCAGGTTGCTTCAATCCATTCCTCACCCTTCCCAACCACCACAGTGCATTGGTTTTGCTACCACAAATGCTAGCACCTTGCTATTAGCCCCTTCTTGTGACTGGTCTTTTGCACCAAATGTGTTACTCAGTTCCACCGCTGTAACGGCCGCCGCGGCCTCTTCTTCCTCCATGGACATTCCGGCCGGCCTCGGATTCGACGGCAGTGGCCATGCTTGTGACGGCTCCTCCAGCTTTAATCAGCATGAGGTAATCAGTGAATAA 834 0.5036 MDTNQNTTTSAFTNANSTWNLEKMETNEQQQQHHDHIILQVQDPLGSGIWPNNYPHNHNLNLLQMHQTPPTTTSSIVAPPSSSGFLGDILGVHNMDEDEEPEEELGAMKEMMYKIAAMQPVDIDPATIRKPKRRNVRISDDPQSVAARHRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQSIPHPSQPPQCIGFATTNASTLLLAPSCDWSFAPNVLLSSTAVTAAAASSSSMDIPAGLGFDGSGHACDGSSSFNQHEVISE 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01320 277 SMART finulus 144 193 IPR011598 GO:0046983
Spst3g01320 277 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 9 226 IPR045843 GO:0003700|GO:0006355
Spst3g01320 277 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 138 187 IPR011598 GO:0046983
Spst3g01320 277 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 144 197 IPR036638 GO:0046983
Spst3g01320 277 Gene3D - 141 199 IPR036638 GO:0046983
Spst3g01320 277 FunFam BHLH transcription factor 141 203 - -
Spst3g01320 277 CDD bHLH_AtIND_like 139 196 - -
Spst3g01320 277 Pfam Helix-loop-helix DNA-binding domain 148 187 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g01320 Spst-Chr3 16649806 16650639 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g01320 107 217 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00120 74.775 3.04e-48 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst3g01320 HLH 1.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01320 - - gmx:100775296 400.208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g01320 3 16649806 16650639 Spst3g01320 3 16649806 16650639 ECH
Spst3g01320 3 16649806 16650639 Spst9g01762 9 19487661 19488284 PCT