Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01309 ATGTCTGTTTACCTCGAAATTGGAGTCTCTTCATCCATGGTCGGCCACCGCTCCTGCTTCACCAACCGTGCCAGGCTTTGCTCTTCCTCGAAAATCCCCTTTCGCCACTTGACTTGTCACTACTCTCTACCATTTAGGGTTTTTCTTTTCTTTTCCTTCCCTTCCACGCGTCACGTTGTGTTCTGTATTATTTTCTATTCGATGGCTGTAACGAAATTGATACCGGGGTTTCGGTTCCACCCCTCTGGGGTGGAATTAGTCCTGTACTTTCTGAAGAGGAAAGTGATGGGGCAAAAGTTCTGTAGTGGTGTCATTGCTGATCTTGACATATACAAATATGCTCCTTGGGATCTCCCAGAAAAATCTTGTCTGAGAACTGGGGAATTGGAATGGTACTTCTTCTGCCCGCTGGAGAAGAAATATGGCAGTGGGAGTAGGATGAAGCGCGCTACTGAAATTGGGTACTGGAAAGCTACTGGGAGGGATAGAGTTGTTCAGCACAATAATCAAACGGTGGGAATGATTAAAACACTGATATTTCACACGGGTAAATCGCCTAGTGGTGAAAGAACTGATTGGGTTATGCACGAGTATAGGCTCGAAGATAAGGGCCTTGCTGACAAAGGAATTGCACAGGATTCCTATGTAGTCTGCAAGGTATTTCAAAAGGAAGGTCTTGGTCCCAGAAACGGTGCACAATATGCAAGACCATTTAATGAGGAAGAGTGGAACGATGTAGAACTGGAAATACCTGGTACTGATTCAACTGCACCGGTTCCCATCTTACCTATGACAACTGATCCTTCTGTCCCAAAGGACAATCCGCCCCCAGCTACTGGATGTATTGGGTCACCATCCCCGTCTTGTCTATCAAGATCAATGCCTTCTAGCACAGAGAATCCTTCTGATCAAAATGATAAAGCTTCTAACAATGATGATGAAGATTTTTTATGGATGTTTGATGTTTTTGAAGATGTCGACAAAATGTCTCAGAAGGTTGGTAATGGTCAGGAAAACATTGCTGAAGGTGCACCACCTTTGGATGAATTTTTCGAGGGCTTGGAAGACTACTGTGCTGCTGCTGCTCTTCCTGTTTTCTCCTCTTTCCAGAATACTCAATTTAGCACAAACGGAATGGCTACGACAGGTGATGTCGGGAACTTCGATGGCTTGGACTTCCTAGAGTTGTTTGACCTAGATTCTCCATAG 1209 0.4475 MSVYLEIGVSSSMVGHRSCFTNRARLCSSSKIPFRHLTCHYSLPFRVFLFFSFPSTRHVVFCIIFYSMAVTKLIPGFRFHPSGVELVLYFLKRKVMGQKFCSGVIADLDIYKYAPWDLPEKSCLRTGELEWYFFCPLEKKYGSGSRMKRATEIGYWKATGRDRVVQHNNQTVGMIKTLIFHTGKSPSGERTDWVMHEYRLEDKGLADKGIAQDSYVVCKVFQKEGLGPRNGAQYARPFNEEEWNDVELEIPGTDSTAPVPILPMTTDPSVPKDNPPPATGCIGSPSPSCLSRSMPSSTENPSDQNDKASNNDDEDFLWMFDVFEDVDKMSQKVGNGQENIAEGAPPLDEFFEGLEDYCAAAALPVFSSFQNTQFSTNGMATTGDVGNFDGLDFLELFDLDSP 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01309 402 MobiDBLite consensus disorder prediction 284 305 - -
Spst3g01309 402 Pfam No apical meristem (NAM) protein 75 200 IPR003441 GO:0003677|GO:0006355
Spst3g01309 402 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 72 297 - -
Spst3g01309 402 FunFam Nac domain-containing protein 86 82 226 - -
Spst3g01309 402 SUPERFAMILY NAC domain 64 223 IPR036093 GO:0003677|GO:0006355
Spst3g01309 402 Gene3D NAC domain 83 226 IPR036093 GO:0003677|GO:0006355
Spst3g01309 402 MobiDBLite consensus disorder prediction 250 311 - -
Spst3g01309 402 ProSiteProfiles NAC domain profile. 73 223 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g01309 Spst-Chr3 16515298 16518322 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g01309 68 295 NAC Transcription Factor Family AT5G64060 54.310 9.03e-84 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Spst3g01309 NAM 1.5e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01309 - - vra:106770001 480.33