Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01301 ATGAACGAATCTCCAAACACCATTCCTCCCCTATTCAGATGCCCCATAAGTTTAGACTTGTTGGAAGATCCTGTAACCTTGTGCACAGGCCAAACCTATGACAGGTCAAACATAGAAAAATGGCTTGCTGCTGGTAACCTCACATGTCCAGTCACAATGCAAAAGCTTCACGATCCATCCATTGTTCCCAACCACACTCTTCGCCACTTGATCGATCAGTGGCTTCAACTGGGTCCCCTGTTCGACCCTGCTAACCCTGAAACTTCAACTTTTGACTCCTTAGCTTCTCTCAAGCGCAACCTTGAATCCCATGAAAGCAGCTTAGAAAACAAGCTGCGAGCACTTAGGAAAATCAGTCTCTTATCTGATGAGTATTGCTCCTTTAACAAATCATGCTTCCTTCAATTGAACTTCCTACCACTGCTTTTGAAACTAGTTTTTGGAACTCAAGTATCAATAAATCACATGATCAACTTCATAGAGCTAGCACTTTGTTGCATTCAGAAATTGCTGCCACTTGGTAGTTTGGAGCCTCTAAATGTGATCAAAGATGGGTCTAAATTAGCCACGTTTGTGCTACTATTTGAGAAGGGGACTAACTCGGTTAAGACTGGCTTGTGCTGTATTATAGACTCGGCATCTTCGTCATCTGAGACAGTGGATCTATGTTATACTCTTGGAAACACTCACAAACTAGTGCACGAGATTGTTCAAGTTGTTAACCAAAATTACGAAGTTTCTGGGGATGCAATTAAAGCCATGTCAGCACTATGTTCATTGCAATCCAACAGAGGGAGTTTGGTGAGAGGAGGAGCAATAGATGGTATCATGAGATACATCTCATCAGAAAGAAGAAACATGACCCCACTTGCAGTGAGAATAGTTGAGAAACTTATGGGGCTGGAAAGTGCTAAAGTGGCATTGGTGAATCACCCTAATGGTGTTCAAACTTTGGTTAATATGGTTTTCAGGGTATCAGATCAAGAATGCAGCGAGAGTGCTGTGGAGGTGCTTTTAGTTGTTTGTGGTGAATTTGAGCGTGCAAAAGACAAAGCCATGGAAAGTGGAGTTTTGACTCGGTTGCTATTGCTCCTGCAGAGTCAGTGTAGTAACACAACAAAATCAAAGGCACGAATGCTTCTCAAATTGCTAAGATCAGAGCCAAAGCAGCGTTAG 1176 0.426 MNESPNTIPPLFRCPISLDLLEDPVTLCTGQTYDRSNIEKWLAAGNLTCPVTMQKLHDPSIVPNHTLRHLIDQWLQLGPLFDPANPETSTFDSLASLKRNLESHESSLENKLRALRKISLLSDEYCSFNKSCFLQLNFLPLLLKLVFGTQVSINHMINFIELALCCIQKLLPLGSLEPLNVIKDGSKLATFVLLFEKGTNSVKTGLCCIIDSASSSSETVDLCYTLGNTHKLVHEIVQVVNQNYEVSGDAIKAMSALCSLQSNRGSLVRGGAIDGIMRYISSERRNMTPLAVRIVEKLMGLESAKVALVNHPNGVQTLVNMVFRVSDQECSESAVEVLLVVCGEFERAKDKAMESGVLTRLLLLLQSQCSNTTKSKARMLLKLLRSEPKQR 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01301 391 Pfam U-box domain 8 76 IPR003613 GO:0004842|GO:0016567
Spst3g01301 391 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 79 IPR013083 -
Spst3g01301 391 Gene3D - 188 391 IPR011989 -
Spst3g01301 391 ProSiteProfiles U-box domain profile. 7 81 IPR003613 GO:0004842|GO:0016567
Spst3g01301 391 SUPERFAMILY RING/U-box 4 76 - -
Spst3g01301 391 CDD RING-Ubox_PUB 9 56 IPR045210 -
Spst3g01301 391 FunFam RING-type E3 ubiquitin transferase 8 79 - -
Spst3g01301 391 SUPERFAMILY ARM repeat 97 388 IPR016024 -
Spst3g01301 391 PANTHER WDSAM1 PROTEIN 8 387 IPR045185 GO:0061630
Spst3g01301 391 Coils Coil 94 118 - -
Spst3g01301 391 SMART Ubox_2 11 74 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g01301 Spst-Chr3 16428886 16430061 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g01301 8 385 U-box Gene Family AT1G49780 30.867 1.12e-42 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01301 - - vum:124836871 649.432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g01301 3 16428886 16430061 Spst3g01301 3 16428886 16430061 ECH